Miyakogusa Predicted Gene

Lj2g3v1238830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1238830.1 Non Chatacterized Hit- tr|I1J641|I1J641_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20587 PE,77.46,0,no
description,Armadillo-like helical; ARM repeat,Armadillo-type fold;
SUBFAMILY NOT NAMED,NULL; FAM,CUFF.36535.1
         (1109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38440.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...   931   0.0  

>AT4G38440.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 21
            plant structures; EXPRESSED DURING: 12 growth stages;
            CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated
            protein 1, C-terminal (InterPro:IPR013929), RNA
            polymerase II-associated protein 1, N-terminal
            (InterPro:IPR013930); Has 276 Blast hits to 220 proteins
            in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151;
            Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes -
            17 (source: NCBI BLink). | chr4:17989115-17994549 FORWARD
            LENGTH=1465
          Length = 1465

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1108 (45%), Positives = 700/1108 (63%), Gaps = 62/1108 (5%)

Query: 4    SEDKVDKSVDWKAVWAFALGPEPELVLALRICLDDNHNSVVLACAKVVQCALSCDVNENY 63
            + ++ DKS DW+A+WA+ALGPEPELVLALR+ LDDNH SVV+AC KV+QC LSC +NEN+
Sbjct: 408  AREEKDKSTDWEAIWAYALGPEPELVLALRMALDDNHASVVIACVKVIQCLLSCSLNENF 467

Query: 64   FDISETIATCDKDIYTAPVFRSRPDTAAGFLPGGFWKYSAKPSNILPFNEDSMDDETEGK 123
            F+I E +    KDI+TA VFRS+P+   GFL G +WKYSAKPSNI+ F E+ +DD TE  
Sbjct: 468  FNILENMGPHGKDIFTASVFRSKPEIDLGFLRGCYWKYSAKPSNIVAFREEILDDGTEDT 527

Query: 124  HTIQDDVVVAGQDFTAGLVRMGILPRLRYLLETDPSAALEECVISILIAIVRHSPSCANA 183
             TIQ DV VAGQD  AGLVRM ILPR+ +LLET+P+AALE+ +IS+ IAI RHSP C  A
Sbjct: 528  DTIQKDVFVAGQDVAAGLVRMDILPRIYHLLETEPTAALEDSIISVTIAIARHSPKCTTA 587

Query: 184  VLKCQRLIQTIVHRFTVDN-IEIRSSMIKSVKLLKVLARSDRKTCLEFVKNGYFQAMTWN 242
            +LK  + +QTIV RF ++  +++ SS I SV+LLKVLAR D+ TC+EFVKNG F A+TW+
Sbjct: 588  ILKYPKFVQTIVKRFQLNKRMDVLSSQINSVRLLKVLARYDQSTCMEFVKNGTFNAVTWH 647

Query: 243  LYQYPPSIDHWLKLGKEKCKLGSALIVEQLQFWRVCIQYGYCVSYFSEMFPALCFWLNPP 302
            L+Q+  S+D W+KLGK+ CKL S L+VEQL+FW+VCI  G CVS F E+FPALC WL+ P
Sbjct: 648  LFQFTSSLDSWVKLGKQNCKLSSTLMVEQLRFWKVCIHSGCCVSRFPELFPALCLWLSCP 707

Query: 303  SFKKLIENNVLCESTSISRETYLVLESLAGRLPNLFSQQCLNNQLPESSGGAEVWSWSYV 362
            SF+KL E N++ E TS+S E YLVLE+ A  LPN++SQ      +P +  G   W WSYV
Sbjct: 708  SFEKLREKNLISEFTSVSNEAYLVLEAFAETLPNMYSQ-----NIPRNESG--TWDWSYV 760

Query: 363  RPMVDLAIKWIASRNDPEVSKLFEGQEEGICDFTLGDLSATPLLWVYAAVTDMLFRVLER 422
             PM+D A+ WI     P++ K     E+GI   +   +S T LLW+Y+ V   + +VLE+
Sbjct: 761  SPMIDSALSWITLA--PQLLKW----EKGIESVS---VSTTTLLWLYSGVMRTISKVLEK 811

Query: 423  VTLEDAINLPEGNGLVPWLPDFVPKIGLDFIKYWHLGFSVSAGTKCGK-YSRGGSFMEEL 481
            ++ E           +PWLP+FVPKIGL  IK+  L FSV+  ++ GK  SR  SFME L
Sbjct: 812  ISAEGE------EEPLPWLPEFVPKIGLAIIKHKLLSFSVADVSRFGKDSSRCSSFMEYL 865

Query: 482  IYLRQKG-DIEMSLASTCCLNGMIKVITSMDNLIQSCKTDIGSLPYEEQRLSGEEKVLKE 540
             +LR++  D E++LAS  CL+G+ + I S+ NLI+S ++ + + P++    +G+E VL  
Sbjct: 866  CFLRERSQDDELALASVNCLHGLTRTIVSIQNLIESARSKMKA-PHQVSISTGDESVLAN 924

Query: 541  GIVSRCLVDLRSMLNFFMFSVSSGWHCMQSIEIXXXXXXXXXXXXXXXXXXXXXXSKTVL 600
            GI++  L +L S+   F  SVSS W  +QSIE+                      S  VL
Sbjct: 925  GILAESLAELTSVSCSFRDSVSSEWPIVQSIELHKRGGLAPGVGLGWGASGGGFWSTRVL 984

Query: 601  LMQTDARFLIYLLETFKNAS-KDVPETEEKTSTMQRVKTALELYLTAGPRDKVALEKTLD 659
            L Q  A     LL  F N S  D    +     M +V +AL + L AGPRD + +E+  +
Sbjct: 985  LAQAGAG----LLSLFLNISLSDSQNDQGSVGFMDKVNSALAMCLIAGPRDYLLVERAFE 1040

Query: 660  LLFDVSVLKYLDLCIQNFLLNRRGKTFGWQHEEEDYMHFSRTLSSHFRSRWLXXXXXXXX 719
             +     L++L  CI++   N++  +F W+  E DY   S  L+SHFR RWL        
Sbjct: 1041 YVLRPHALEHLACCIKS---NKKNISFEWECSEGDYHRMSSMLASHFRHRWLQQKGRSIA 1097

Query: 720  XXXXXXXXXXXNPKFDACLDTIYEDSDM--PSTRSPCSNSLMVEWAKQKLPLPLHFYLSP 777
                         K    L+TI+ED +M   ST+   S+S  +EWA Q++PLP H++LS 
Sbjct: 1098 EEGVSGVR-----KGTVGLETIHEDGEMSNSSTQDKKSDSSTIEWAHQRMPLPPHWFLSA 1152

Query: 778  ISTIFHSKRA-GPLKANSVHRVDPDMHDLANLREVSKCGLFFVLGIEAMTIQDTEIPSPI 836
            IS +   K + GP ++               L EV+K G+FF+ G+E+ +   + +PSP+
Sbjct: 1153 ISAVHSGKTSTGPPEST-------------ELLEVAKAGVFFLAGLESSSGFGS-LPSPV 1198

Query: 837  QHVSLTWKLHSLSVNFLVGMEILEQDQDRETFEALQDLYGELLDKARLNQSKSDDKKDIE 896
              V L WK H+LS   LVGM+I+E    R  +  LQ+LYG+ LD+ARLN       +D E
Sbjct: 1199 VSVPLVWKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQFLDEARLNH------RDTE 1252

Query: 897  FLKFQSEIHEGYSIVIDDLVEQFSAISYGDMIFGRQISLYLHRCVEASTRLLAWNTLSNA 956
             L+F+S+IHE YS  ++ +VEQ++A+SYGD+++GRQ+S+YLH+CVE S RL AW  LSNA
Sbjct: 1253 LLRFKSDIHENYSTFLEMVVEQYAAVSYGDVVYGRQVSVYLHQCVEHSVRLSAWTVLSNA 1312

Query: 957  HVLELLPPLEKCFSAAEGYLEPTEDNERILEAYAKSWVSDSLDRAVIRGTVSYTLVVHHL 1016
             VLELLP L+KC   A+GYLEP E+NE +LEAY KSW   +LDRA  RG+V+YTLVVHH 
Sbjct: 1313 RVLELLPSLDKCLGEADGYLEPVEENEAVLEAYLKSWTCGALDRAATRGSVAYTLVVHHF 1372

Query: 1017 SSFIFNACPVDKXXXXXXXXXXXXXDYAGKQRHEGMLLNLIHHNKSPKSDTDEQLENTWL 1076
            SS +F     DK             D + K+  EGM+L+L+ + K   +  +E++     
Sbjct: 1373 SSLVFCNQAKDKVSLRNKIVKTLVRDLSRKRHREGMMLDLLRYKKGSANAMEEEVIAAET 1432

Query: 1077 EARLKVLTEACEGNSSLLTQVNKLKAAA 1104
            E R++VL E CEGNS+LL ++ KLK+AA
Sbjct: 1433 EKRMEVLKEGCEGNSTLLLELEKLKSAA 1460