Miyakogusa Predicted Gene

Lj2g3v1228820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1228820.1 Non Chatacterized Hit- tr|D7MEY9|D7MEY9_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,43.26,3e-18,seg,NULL; RPAP1_N,RNA polymerase II-associated
protein 1, N-terminal; SUBFAMILY NOT NAMED,NULL; FAMI,CUFF.36532.1
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38440.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...    99   6e-21

>AT4G38440.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 21
           plant structures; EXPRESSED DURING: 12 growth stages;
           CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated
           protein 1, C-terminal (InterPro:IPR013929), RNA
           polymerase II-associated protein 1, N-terminal
           (InterPro:IPR013930); Has 276 Blast hits to 220 proteins
           in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151;
           Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes -
           17 (source: NCBI BLink). | chr4:17989115-17994549
           FORWARD LENGTH=1465
          Length = 1465

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 140/315 (44%), Gaps = 74/315 (23%)

Query: 1   MENQNGKAVDPKKKVKVLTTSSLKINEQDASDLVGSIVEKGISDSPNNSTPFISFPKPTV 60
           ME  +G+ V+P++   VL +            LVGSIVEKGIS+  N        P+P++
Sbjct: 1   MEQSSGR-VNPEQPNNVLAS------------LVGSIVEKGISE--NKPPSKPLPPRPSL 45

Query: 61  LPFPVARHRSHGPHWRPLSSKXXXXXXXXXXXXXXXXXXXXKAFMEFESVSAFANPVQRR 120
           L FPVARHRSHGPH  P+ S                       FM  +S++AFA P+QR+
Sbjct: 46  LSFPVARHRSHGPHLAPVGSSIAQPKDYNDDQEEEEAEER---FMNADSIAAFAKPLQRK 102

Query: 121 RKKDMDFRKWKEITQDDNSSIGKESEEDVSSFSRNTRKKKNANGSMNAGKKTSTLSDDNV 180
            KKDMD  +WK++   D+      +   V   SR  +  +     + +    +T S  N 
Sbjct: 103 EKKDMDLGRWKDMVSGDDP-----ASTHVPQQSRKLKIIETRPPYVASADAATTSS--NT 155

Query: 181 LASAELGAKMQLDNSDGGFINAATSME---------LDVSNKVKPDLERIHSDRTLDNNV 231
           L +A    + +  +    FI    + E         L VSN     L   H+  +L++++
Sbjct: 156 LLAARASDQREFVSDKAPFIKNLGTKERVPLNASPPLAVSN----GLGTRHASSSLESDI 211

Query: 232 DSLDVLGPEKNYXXXXXXXXXXXXXEQEPMSFEGEIDAENRARIKQMSAEEIVEARAEIM 291
           D                                     EN A+++ MS +EI EA+AE++
Sbjct: 212 D------------------------------------VENHAKLQTMSPDEIAEAQAELL 235

Query: 292 EKISPALLEVLQKRG 306
           +K+ PALL +L+KRG
Sbjct: 236 DKMDPALLSILKKRG 250