Miyakogusa Predicted Gene

Lj2g3v1226720.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1226720.1 tr|B9HWV3|B9HWV3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_659034 PE=4
SV=1,34.27,0.00000000000005,seg,NULL; DnaJ,Heat shock protein DnaJ,
N-terminal; coiled-coil,NULL; Chaperone J-domain,Heat shock
,CUFF.36528.1
         (675 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69060.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...   226   5e-59

>AT1G69060.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein
           | chr1:25965055-25967273 FORWARD LENGTH=630
          Length = 630

 Score =  226 bits (575), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 197/574 (34%), Positives = 280/574 (48%), Gaps = 87/574 (15%)

Query: 137 DVDDSRNAYKKESVSNMDRRKKSFFGEDAGGSRYGL----YGXXXXXXXXXXXXXXFMDR 192
           D DD +   +K +     + K++F    + G R+GL    Y                  R
Sbjct: 107 DNDDCQFIQEKCATFRFSKCKQTFSTMPSHGIRFGLGSDTYSDFSESDCSDCEILEGSHR 166

Query: 193 DEWEKWEKVSAKRKRGVSNNQTCQEEHAGPSRCHNNVYIDIDEENTYEQHAEVPVYPG-- 250
           D  E+WE+ +  RK   +      EE AGPS  H +   +   E   EQH +   +    
Sbjct: 167 DVREQWEQAALLRKMKKAGKAGLSEE-AGPSNLHCDTNFEPGFERRTEQHDQTSFFFAAR 225

Query: 251 -PSNGK--YVKESQPSFSARDDSQVP----RCPKEKNCNFCNSVAGPSKFKENQPSFSYK 303
            P  GK    +E+ PS    D++  P    R  +    +F  + + P   KE   +F   
Sbjct: 226 NPDGGKAGLTEEAGPSNLHCDNNFRPGFESRTEQHDQTSFFFTASNPDGEKETSSTFFGA 285

Query: 304 DGSQVN-GIYFNVETKTSFKDSDQKAEQSSKSPRSESVKEMHSFRQSFDVKNQCSDIKNG 362
           DG   +   YF      S  + D +A+ ++ S          +F    D +   S +  G
Sbjct: 286 DGRIPDMTTYFG-----SVMEEDNQAKHTANS----------TFSSKEDFRGP-SPLSPG 329

Query: 363 ERTREEKVSPSPKGKNSDYFSGAS---GASSFKKDLSVEESKSMGFSPNACEMQVDNNES 419
            R   E+    P      +F+        +SFKK   VE+       PN  ++Q    E+
Sbjct: 330 IRVEHERFDTPPT-----HFTSPKEPIHQTSFKK--VVEQ-------PNKVQVQC---ET 372

Query: 420 ALGSKDAGFQKDMGDLSFKKDLGVEESKSMGFSPNACEMQVDNNE--------------- 464
           +L S +    K++   S+ K++  EE  S    P       D                  
Sbjct: 373 SL-SPEENQNKNVAYQSYTKEVEEEEDASKLSPPQTSNGYGDTTHVFGTQSNGARCEHGI 431

Query: 465 SALESKEASLAEVYSICASIDERHVNGNGLVLHGQDGGLTASNERNIINEKEKLKETDEY 524
           S  ES+E  +  + S    +  +  NG    +             +++  +E LKETDEY
Sbjct: 432 SLDESREPIIDPIPSTSGQV--QGTNGTAPAI-------------DVMLNREILKETDEY 476

Query: 525 KQAVEEEWASRQRQLQIQAEEAQRLRKRKKAESQRILDMQRRQKERIEEVRETQKKDEEF 584
           K+A EEEW SRQRQLQIQA+EAQ+ RKR+K E+ R L+M+RRQKER+EEVRETQKKDEE 
Sbjct: 477 KRAQEEEWESRQRQLQIQADEAQKQRKRRKLENMRKLEMERRQKERVEEVRETQKKDEEN 536

Query: 585 LNMKEQLRVEIRKRLNQLEMRCSDMTSLLRGLGIHVGGS---FPKELHAAYKRALFKFHP 641
           +NMKE++R EI K L  LE++  +M +LLRGLGI VGG     P E+HAAYKRA+ KFHP
Sbjct: 537 MNMKEKVRAEITKSLKLLELKSFNMAALLRGLGIQVGGGISPLPNEVHAAYKRAVLKFHP 596

Query: 642 DRASK-TDIREQVEAEEKFKLISRLKDKY-LLTP 673
           DRAS+  DI++QVEAEEKFKLI+R+KDK+ L+ P
Sbjct: 597 DRASRGGDIKQQVEAEEKFKLIARMKDKFKLIAP 630