Miyakogusa Predicted Gene

Lj2g3v1225640.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1225640.2 Non Chatacterized Hit- tr|I3T3C1|I3T3C1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.86,0,seg,NULL;
AAA,ATPase, AAA-type, core; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; P-loop contai,CUFF.36520.2
         (417 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73110.1 | Symbols:  | P-loop containing nucleoside triphosph...   640   0.0  
AT2G39730.3 | Symbols: RCA | rubisco activase | chr2:16571174-16...   321   7e-88
AT2G39730.2 | Symbols: RCA | rubisco activase | chr2:16571046-16...   321   7e-88
AT2G39730.1 | Symbols: RCA | rubisco activase | chr2:16570951-16...   320   1e-87

>AT1G73110.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:27494344-27496844
           REVERSE LENGTH=432
          Length = 432

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/372 (79%), Positives = 340/372 (91%)

Query: 46  KKRLSQQSSWEAKDAEGRDYLYRLGKEADNMNIAVGQRAGVIDDLFAGNFLGKDSDIVFD 105
           +K+LS+QSSWE KD+EG+DYLYRLG E+DN+NIAVG R+G+IDD+F G+FLGKDSDIVFD
Sbjct: 61  RKKLSEQSSWEVKDSEGKDYLYRLGAESDNVNIAVGARSGMIDDVFIGDFLGKDSDIVFD 120

Query: 106 YRQKATRSFQYLQGDYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQ 165
           YRQKATRSF++LQGDYYIAP F+DKV  HI KNYLA  LN+K+PLILGIWGGKGQGKTFQ
Sbjct: 121 YRQKATRSFEHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQGKTFQ 180

Query: 166 TELIFQAMGMEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAG 225
           TELIF+ MG+EPVIMSAGELES+RAGEPGRLIR+RYRTASQV+QNQGKMS LMINDIDAG
Sbjct: 181 TELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAG 240

Query: 226 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAP 285
           LGRFG TQMTVNNQIVVGTLMNL+DNPTRVSVGQ+WRE+D+ NR+P+IVTGNDFST+YAP
Sbjct: 241 LGRFGETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAP 300

Query: 286 LIRDGRMDKFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTY 345
           LIR+GRM+KFYWQP REDI NIV RMYEKDGISR +V  IVD FPNQALDFYGALRSRTY
Sbjct: 301 LIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTY 360

Query: 346 DKSILKWVDDIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMES 405
           D+SILKWVD+ GG+E  G  +L+R+K Q +P F  PEQTV+ALLESGYSLI EQ+L+ME+
Sbjct: 361 DRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMET 420

Query: 406 KLSKEYMKNMED 417
           KLSKEYMKNM+D
Sbjct: 421 KLSKEYMKNMDD 432


>AT2G39730.3 | Symbols: RCA | rubisco activase |
           chr2:16571174-16573345 REVERSE LENGTH=441
          Length = 441

 Score =  321 bits (822), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/312 (50%), Positives = 217/312 (69%), Gaps = 9/312 (2%)

Query: 104 FDYRQKATRSFQY--LQGDYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQG 161
           ++Y  +  R +    +   +YIAP FMDK+V HI KN+L  L N+KVPLILGIWGGKGQG
Sbjct: 112 YEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQG 170

Query: 162 KTFQTELIFQAMGMEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMIND 221
           K+FQ EL+   MG+ P++MSAGELES  AGEP +LIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFIND 229

Query: 222 IDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFS 280
           +DAG GR G  TQ TVNNQ+V  TLMN++DNPT V +   + + +   R+PII TGNDFS
Sbjct: 230 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFS 288

Query: 281 TIYAPLIRDGRMDKFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGAL 340
           T+YAPLIRDGRM+KFYW P RED   +   ++  D I  +++  +VD FP Q++DF+GAL
Sbjct: 289 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGAL 348

Query: 341 RSRTYDKSILKWVDDIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQE 400
           R+R YD  + K+V+ + GVE  G +++  R  +  PVF  PE T + L+E G  L+ EQE
Sbjct: 349 RARVYDDEVRKFVESL-GVEKIGKRLVNSR--EGPPVFEQPEMTYEKLMEYGNMLVMEQE 405

Query: 401 LVMESKLSKEYM 412
            V   +L++ Y+
Sbjct: 406 NVKRVQLAETYL 417


>AT2G39730.2 | Symbols: RCA | rubisco activase |
           chr2:16571046-16573345 REVERSE LENGTH=446
          Length = 446

 Score =  321 bits (822), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/312 (50%), Positives = 217/312 (69%), Gaps = 9/312 (2%)

Query: 104 FDYRQKATRSFQY--LQGDYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQG 161
           ++Y  +  R +    +   +YIAP FMDK+V HI KN+L  L N+KVPLILGIWGGKGQG
Sbjct: 112 YEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQG 170

Query: 162 KTFQTELIFQAMGMEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMIND 221
           K+FQ EL+   MG+ P++MSAGELES  AGEP +LIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFIND 229

Query: 222 IDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFS 280
           +DAG GR G  TQ TVNNQ+V  TLMN++DNPT V +   + + +   R+PII TGNDFS
Sbjct: 230 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFS 288

Query: 281 TIYAPLIRDGRMDKFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGAL 340
           T+YAPLIRDGRM+KFYW P RED   +   ++  D I  +++  +VD FP Q++DF+GAL
Sbjct: 289 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGAL 348

Query: 341 RSRTYDKSILKWVDDIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQE 400
           R+R YD  + K+V+ + GVE  G +++  R  +  PVF  PE T + L+E G  L+ EQE
Sbjct: 349 RARVYDDEVRKFVESL-GVEKIGKRLVNSR--EGPPVFEQPEMTYEKLMEYGNMLVMEQE 405

Query: 401 LVMESKLSKEYM 412
            V   +L++ Y+
Sbjct: 406 NVKRVQLAETYL 417


>AT2G39730.1 | Symbols: RCA | rubisco activase |
           chr2:16570951-16573345 REVERSE LENGTH=474
          Length = 474

 Score =  320 bits (821), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/312 (50%), Positives = 217/312 (69%), Gaps = 9/312 (2%)

Query: 104 FDYRQKATRSFQY--LQGDYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQG 161
           ++Y  +  R +    +   +YIAP FMDK+V HI KN+L  L N+KVPLILGIWGGKGQG
Sbjct: 112 YEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQG 170

Query: 162 KTFQTELIFQAMGMEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMIND 221
           K+FQ EL+   MG+ P++MSAGELES  AGEP +LIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFIND 229

Query: 222 IDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFS 280
           +DAG GR G  TQ TVNNQ+V  TLMN++DNPT V +   + + +   R+PII TGNDFS
Sbjct: 230 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFS 288

Query: 281 TIYAPLIRDGRMDKFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGAL 340
           T+YAPLIRDGRM+KFYW P RED   +   ++  D I  +++  +VD FP Q++DF+GAL
Sbjct: 289 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGAL 348

Query: 341 RSRTYDKSILKWVDDIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQE 400
           R+R YD  + K+V+ + GVE  G +++  R  +  PVF  PE T + L+E G  L+ EQE
Sbjct: 349 RARVYDDEVRKFVESL-GVEKIGKRLVNSR--EGPPVFEQPEMTYEKLMEYGNMLVMEQE 405

Query: 401 LVMESKLSKEYM 412
            V   +L++ Y+
Sbjct: 406 NVKRVQLAETYL 417