Miyakogusa Predicted Gene

Lj2g3v1203450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1203450.1 tr|I3T8R8|I3T8R8_LOTJA Peptidyl-prolyl cis-trans
isomerase OS=Lotus japonicus PE=4
SV=1,95.45,3e-17,FKBP_PPIASE,Peptidyl-prolyl cis-trans isomerase,
FKBP-type, domain; FKBP_C,Peptidyl-prolyl cis-trans,CUFF.36495.1
         (46 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 ...    67   2e-12
AT3G25230.1 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 ...    67   2e-12
AT5G48570.1 | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptid...    67   2e-12

>AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 |
          chr3:9188257-9191175 FORWARD LENGTH=562
          Length = 562

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/36 (83%), Positives = 30/36 (83%)

Query: 9  EAGDEVNVHYTGTLLDGTKFDSSRHRRIPFNFTLGQ 44
          E GDEV VHYTGTLLDGTKFDSSR R  PF FTLGQ
Sbjct: 55 ENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQ 90


>AT3G25230.1 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 |
          chr3:9188257-9191137 FORWARD LENGTH=551
          Length = 551

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/36 (83%), Positives = 30/36 (83%)

Query: 9  EAGDEVNVHYTGTLLDGTKFDSSRHRRIPFNFTLGQ 44
          E GDEV VHYTGTLLDGTKFDSSR R  PF FTLGQ
Sbjct: 55 ENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQ 90


>AT5G48570.1 | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type
          peptidyl-prolyl cis-trans isomerase family protein |
          chr5:19690746-19693656 REVERSE LENGTH=578
          Length = 578

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/36 (83%), Positives = 30/36 (83%)

Query: 9  EAGDEVNVHYTGTLLDGTKFDSSRHRRIPFNFTLGQ 44
          E GDEV VHYTGTLLDGTKFDSSR R  PF FTLGQ
Sbjct: 63 ENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQ 98