Miyakogusa Predicted Gene
- Lj2g3v1203430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1203430.1 tr|F6HGF2|F6HGF2_VITVI DNA-directed RNA
polymerase OS=Vitis vinifera GN=VIT_01s0010g00690 PE=3
SV=1,69.58,0,RNA_pol,DNA-directed RNA polymerase, phage-type;
seg,NULL; DNA/RNA polymerases,NULL; no description,,CUFF.36494.1
(990 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68990.1 | Symbols: MGP3 | male gametophyte defective 3 | chr... 1223 0.0
AT1G68990.2 | Symbols: MGP3 | male gametophyte defective 3 | chr... 1216 0.0
AT5G15700.1 | Symbols: | DNA/RNA polymerases superfamily protei... 1163 0.0
AT5G15700.2 | Symbols: | DNA/RNA polymerases superfamily protei... 1149 0.0
AT2G24120.1 | Symbols: PDE319, SCA3 | DNA/RNA polymerases superf... 1085 0.0
AT2G24120.2 | Symbols: PDE319, SCA3 | DNA/RNA polymerases superf... 889 0.0
>AT1G68990.1 | Symbols: MGP3 | male gametophyte defective 3 |
chr1:25935499-25940755 REVERSE LENGTH=976
Length = 976
Score = 1223 bits (3165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/1005 (59%), Positives = 723/1005 (71%), Gaps = 44/1005 (4%)
Query: 1 MWAHLAKRTFQRNFKLPSYSPSTRFSQHSNFLEKILQPRNQSTCPVSGSAQVGVFTSINE 60
MW ++ R R K S S S+ N + IL S+ +SG +NE
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL-----SSVNLSGVRNGLSINPVNE 55
Query: 61 LGRSNFSLFEYPFGLNSSLKLARGYASVAEAIVSSSDTEEDCSGGANEVKQMVKKEVKGK 120
+G S F + + GYA+ A+AI S+ ED S G++EV +++ + K
Sbjct: 56 MG--GLSSFRH-----GQCYVFEGYATAAQAIDSTD--PEDESSGSDEVNELITEMEKET 106
Query: 121 PLLDRKAKY---------------KDTMLRKRQVKMETEAWEEAAKEYQELLEDICEQKL 165
+ +KA+ K ML++RQVKMETE WE AA+E +E+L D+CEQKL
Sbjct: 107 ERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKL 166
Query: 166 VPNLPYMKSLFLGWFEPLKSAIVAEQEVCKKSHRKMTHAPYFNDLPADKMAVITMHKLMG 225
PNLPYMKSLFLGWFEP+++AI + + K K+ +AP+ LPADKMAVITMHK+MG
Sbjct: 167 APNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMG 226
Query: 226 LLMTNHNGIGCARVIHAALQIGEAIENEARIXXXXXXXXXXXXXXXXXXEEPDGEFYHAA 285
LLMTN G+G ++++AA QIGEA+E E RI E
Sbjct: 227 LLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTE--------- 277
Query: 286 IENGKLSDXXXXXXXXXXXXXXXXXXSSLIKQQKMQQVMGIIKGLDDWKPWGQEARAKVG 345
++ + L+++ K++QV +++ D +KPWGQEA+ KVG
Sbjct: 278 ------AENVSEEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVG 331
Query: 346 CRVMQLLIETAYIQSPVSQLGGSPPDIRPAFKHTFKTAMADSQKDIRRYGIIECDPLVTK 405
R++QLL+E AYIQ P Q PPDIRPAFK F+T ++ K RRYG IECDPLV K
Sbjct: 332 ARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLK 391
Query: 406 GLEKSAKNMVIPYLPMLVPPNNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVKRAPYNQLE 465
GL+KSA++MVIPYLPML+PP NWT YD+GA+ FLPSYVMRTHGAKQQ +KR P QLE
Sbjct: 392 GLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLE 451
Query: 466 PIFEALDSLGNTKWRINQRLLDVISQIWTSGGRLADLVDRDDVXXXXXXXXXXXXXIRKW 525
P++EALD+LGNTKW+IN+++L ++ +IW +GGR+ LVDR+DV + W
Sbjct: 452 PVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNW 511
Query: 526 KRQVKTIMKENNERHSQRCEIELKLAVARKMKEEKGFYYPHNVDFRGRAYPMHPYLNHLG 585
+ + K +K+NNERHSQRC+IELKL VARKMK+E+GFYYPHNVDFRGRAYP+HPYLNHLG
Sbjct: 512 RWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLG 571
Query: 586 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLCYESRVAFTENHLDDVFDSAD 645
SDLCRGILEF EG+PLGKSGLRWLKIH+ANLYAGGVDKL YE R+AFTE+HL+D+FDS+D
Sbjct: 572 SDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSD 631
Query: 646 RPLEGRRWWLEAEDPLQCLAACINLSEALRSPTPETTISHVPVHMDGSCNGLQHYAALGR 705
RPLEG+RWWL AEDP QCLAACINLSEALRSP PE ISH+P+H DGSCNGLQHYAALGR
Sbjct: 632 RPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGR 691
Query: 706 DKLGAAAVNLVRGDRPADVYSGIASRVLEIMRKDAEKDPETNSXXXXXXXXXXQVDRKLV 765
DKLGA AVNLV G++PADVY+ IA+RVL+IM++DAE+DPET QVDRKLV
Sbjct: 692 DKLGADAVNLVTGEKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLV 751
Query: 766 KQTVMTSVYGVTYVGARDQIKRRLKERCAIEDDSELFSASCYAAKTTLTALEEMFEAARS 825
KQTVMTSVYGVTY GARDQIK+RLKER EDDS F ASCYAAK TL ALEEMFEAAR+
Sbjct: 752 KQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARA 811
Query: 826 IMSWLADCAKVIASTNEPVRWTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRRETDKVLVK 885
I SW DCAK+IAS N V WTTP+GLP VQPYR+ GR ++KT+LQVL+L RETDKV+ +
Sbjct: 812 IKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMAR 871
Query: 886 RQSTAFPPNFVHSLDGSHMMMTAVACKKAGLDFAGVHDSYWTHACDVDEMNRILREKFVE 945
RQ TAF PNF+HSLDGSHMMMTAVAC +AGL FAGVHDS+WTHACDVD MN ILREKFVE
Sbjct: 872 RQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVE 931
Query: 946 LYEAPILENLLESFQKSFPKLNFPPLPERGDFDLREVLNSQYFFN 990
LYE PILENLLESFQKSFP ++FPPLPERGDFDLR+VL S YFFN
Sbjct: 932 LYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976
>AT1G68990.2 | Symbols: MGP3 | male gametophyte defective 3 |
chr1:25935499-25940755 REVERSE LENGTH=983
Length = 983
Score = 1216 bits (3146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/1012 (58%), Positives = 723/1012 (71%), Gaps = 51/1012 (5%)
Query: 1 MWAHLAKRTFQRNFKLPSYSPSTRFSQHSNFLEKILQPRNQSTCPVSGSAQVGVFTSINE 60
MW ++ R R K S S S+ N + IL S+ +SG +NE
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL-----SSVNLSGVRNGLSINPVNE 55
Query: 61 LGRSNFSLFEYPFGLNSSLKLARGYASVAEAIVSSSDTEEDCSGGANEVKQMVKKEVKGK 120
+G S F + + GYA+ A+AI S+ ED S G++EV +++ + K
Sbjct: 56 MG--GLSSFRH-----GQCYVFEGYATAAQAIDSTD--PEDESSGSDEVNELITEMEKET 106
Query: 121 PLLDRKAKY---------------KDTMLRKRQVKMETEAWEEAAKEYQELLEDICEQKL 165
+ +KA+ K ML++RQVKMETE WE AA+E +E+L D+CEQKL
Sbjct: 107 ERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKL 166
Query: 166 VPNLPYMKSLFLGWFEPLKSAIVAEQEVCKKSHRKMTHAPYFNDLPADKMAVITMHKLMG 225
PNLPYMKSLFLGWFEP+++AI + + K K+ +AP+ LPADKMAVITMHK+MG
Sbjct: 167 APNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMG 226
Query: 226 LLMTNHNGIGCARVIHAALQIGEAIENEARIXXXXXXXXXXXXXXXXXXEEPDGEFYHAA 285
LLMTN G+G ++++AA QIGEA+E E RI E
Sbjct: 227 LLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTE--------- 277
Query: 286 IENGKLSDXXXXXXXXXXXXXXXXXXSSLIKQQKMQQVMGIIKGLDDWKPWGQEARAKVG 345
++ + L+++ K++QV +++ D +KPWGQEA+ KVG
Sbjct: 278 ------AENVSEEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVG 331
Query: 346 CRVMQLLIETAYIQSPVSQLGGSPPDIRPAFKHTFKTAMADSQKDIRRYGIIECDPLVTK 405
R++QLL+E AYIQ P Q PPDIRPAFK F+T ++ K RRYG IECDPLV K
Sbjct: 332 ARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLK 391
Query: 406 GLEKS-------AKNMVIPYLPMLVPPNNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVKR 458
GL+KS A++MVIPYLPML+PP NWT YD+GA+ FLPSYVMRTHGAKQQ +KR
Sbjct: 392 GLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKR 451
Query: 459 APYNQLEPIFEALDSLGNTKWRINQRLLDVISQIWTSGGRLADLVDRDDVXXXXXXXXXX 518
P QLEP++EALD+LGNTKW+IN+++L ++ +IW +GGR+ LVDR+DV
Sbjct: 452 TPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPERED 511
Query: 519 XXXIRKWKRQVKTIMKENNERHSQRCEIELKLAVARKMKEEKGFYYPHNVDFRGRAYPMH 578
+ W+ + K +K+NNERHSQRC+IELKL VARKMK+E+GFYYPHNVDFRGRAYP+H
Sbjct: 512 QEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIH 571
Query: 579 PYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLCYESRVAFTENHLD 638
PYLNHLGSDLCRGILEF EG+PLGKSGLRWLKIH+ANLYAGGVDKL YE R+AFTE+HL+
Sbjct: 572 PYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLE 631
Query: 639 DVFDSADRPLEGRRWWLEAEDPLQCLAACINLSEALRSPTPETTISHVPVHMDGSCNGLQ 698
D+FDS+DRPLEG+RWWL AEDP QCLAACINLSEALRSP PE ISH+P+H DGSCNGLQ
Sbjct: 632 DIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQ 691
Query: 699 HYAALGRDKLGAAAVNLVRGDRPADVYSGIASRVLEIMRKDAEKDPETNSXXXXXXXXXX 758
HYAALGRDKLGA AVNLV G++PADVY+ IA+RVL+IM++DAE+DPET
Sbjct: 692 HYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLD 751
Query: 759 QVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERCAIEDDSELFSASCYAAKTTLTALEE 818
QVDRKLVKQTVMTSVYGVTY GARDQIK+RLKER EDDS F ASCYAAK TL ALEE
Sbjct: 752 QVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEE 811
Query: 819 MFEAARSIMSWLADCAKVIASTNEPVRWTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRRE 878
MFEAAR+I SW DCAK+IAS N V WTTP+GLP VQPYR+ GR ++KT+LQVL+L RE
Sbjct: 812 MFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRE 871
Query: 879 TDKVLVKRQSTAFPPNFVHSLDGSHMMMTAVACKKAGLDFAGVHDSYWTHACDVDEMNRI 938
TDKV+ +RQ TAF PNF+HSLDGSHMMMTAVAC +AGL FAGVHDS+WTHACDVD MN I
Sbjct: 872 TDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTI 931
Query: 939 LREKFVELYEAPILENLLESFQKSFPKLNFPPLPERGDFDLREVLNSQYFFN 990
LREKFVELYE PILENLLESFQKSFP ++FPPLPERGDFDLR+VL S YFFN
Sbjct: 932 LREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 983
>AT5G15700.1 | Symbols: | DNA/RNA polymerases superfamily protein |
chr5:5115793-5121609 REVERSE LENGTH=1011
Length = 1011
Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/1013 (57%), Positives = 720/1013 (71%), Gaps = 64/1013 (6%)
Query: 1 MWAHLAKRTFQRNFKLPSYSPSTR----------FSQHSNFLEKILQPRNQSTCPVSGSA 50
MW ++AK+ R+ + S TR FS++ +F +L S C G
Sbjct: 40 MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLG----SPCHGKGFR 95
Query: 51 QVGVFTSINELGRSNFSLFEYPFGLNSSLKLARGYASVAEAIVSSSDTEEDCSGG----- 105
+ T E +S L S LARGY SVAE V S+D EE+
Sbjct: 96 CLSGITRREEFSKSERCL---------SGTLARGYTSVAEEEVLSTDVEEEPEVDELLKE 146
Query: 106 --------ANEVKQMVKKEVKGKPLLDRKAKYKDTMLRKRQVKMETEAWEEAAKEYQELL 157
++ +M K++ G + K+++ L +RQVK+ETE WE AA EY ELL
Sbjct: 147 MKKEKKRESHRSWRMKKQDQFGMG----RTKFQN--LWRRQVKIETEEWERAAAEYMELL 200
Query: 158 EDICEQKLVPNLPYMKSLFLGWFEPLKSAIVAEQEVCKKSHRKMTHAPYFNDLPADKMAV 217
D+CEQKL PNLPY+KSLFLGWFEPL+ AI +QE+ + K T+A Y + LPADK++V
Sbjct: 201 TDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISV 260
Query: 218 ITMHKLMGLLMTNHNGIGCARVIHAALQIGEAIENEARIXXXXXXXXXXXXXXXXXXEEP 277
ITMHKLMG LMT + GC +V+HAA +G+AIE E RI ++
Sbjct: 261 ITMHKLMGHLMTGGDN-GCVKVVHAACTVGDAIEQEIRICTFLDKK-----------KKG 308
Query: 278 DGEFYHAAIENGKLSDXXXXXXXXXXXXXXXXXXSSLIKQQKMQQVMGIIKGLDDWKPWG 337
D +EN + LIK+QK+ V I++ D KPW
Sbjct: 309 DDNEESGGVEN---------ETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWI 359
Query: 338 QEARAKVGCRVMQLLIETAYIQSPVSQLGGSPPDIRPAFKHTFKTAMADSQKDIRRYGII 397
+ RAKVG R+++LL+ TAYIQSP Q PD+RPAF HTFK A S R+YG+I
Sbjct: 360 ADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFVHTFKVAKG-SMNSGRKYGVI 418
Query: 398 ECDPLVTKGLEKSAKNMVIPYLPMLVPPNNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVK 457
ECDPLV KGLEKS + V+PY+PMLVPP W+ YDKGAYLFL SY+M+THGAKQQ EA+K
Sbjct: 419 ECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALK 478
Query: 458 RAPYNQLEPIFEALDSLGNTKWRINQRLLDVISQIWTSGGRLADLVDRDDVXXXXXXXXX 517
AP QL+P+FEALD+LG+TKWR+N+R+L V+ +IW+SGG +AD+VDR DV
Sbjct: 479 SAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTE 538
Query: 518 XXXXIRKWKRQVKTIMKENNERHSQRCEIELKLAVARKMKEEKGFYYPHNVDFRGRAYPM 577
++KWK +VK+ K N+ERHSQRC+ ELKL+VARKMK+E+ FYYPHN+DFRGRAYPM
Sbjct: 539 DEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPM 598
Query: 578 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLCYESRVAFTENHL 637
P+LNHLGSDLCRG+LEFAEGRP+G SGLRWLKIHLANLYAGGVDKL + R+AFTENHL
Sbjct: 599 PPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHL 658
Query: 638 DDVFDSADRPLEGRRWWLEAEDPLQCLAACINLSEALRSPTPETTISHVPVHMDGSCNGL 697
DD+FDSADRPLEG RWWL+AEDP QCLA CI+L+EALRSP+PET +SH+P+H DGSCNGL
Sbjct: 659 DDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGL 718
Query: 698 QHYAALGRDKLGAAAVNLVRGDRPADVYSGIASRVLEIMRKDAEKDPETNSXXXXXXXXX 757
QHYAALGRD LGA AVNLV G++PADVYSGIA+RVL+IMR+DA++DPE
Sbjct: 719 QHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLL 778
Query: 758 XQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERCAIEDDSELFSASCYAAKTTLTALE 817
QVDRKLVKQTVMTSVYGVTY+GARDQIKRRLKER D+ E+F A+CYAAK TL A++
Sbjct: 779 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAID 838
Query: 818 EMFEAARSIMSWLADCAKVIASTNEPVRWTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRR 877
EMF+AAR+IM W +CAK+IAS NE VRWTTP+GLP VQPY Q+G ++KTSLQ LSL+
Sbjct: 839 EMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQH 898
Query: 878 ETDKVLVKRQSTAFPPNFVHSLDGSHMMMTAVACKKAGLDFAGVHDSYWTHACDVDEMNR 937
ETD+V+V+RQ TAFPPNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N
Sbjct: 899 ETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNI 958
Query: 938 ILREKFVELYEAPILENLLESFQKSFPKLNFPPLPERGDFDLREVLNSQYFFN 990
ILREKFVELY PILENLLESF++SFP L+FPPLPERGD DL+ VL+S YFFN
Sbjct: 959 ILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLKVVLDSPYFFN 1011
>AT5G15700.2 | Symbols: | DNA/RNA polymerases superfamily protein |
chr5:5115572-5121609 REVERSE LENGTH=1051
Length = 1051
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/1003 (57%), Positives = 712/1003 (70%), Gaps = 64/1003 (6%)
Query: 1 MWAHLAKRTFQRNFKLPSYSPSTR----------FSQHSNFLEKILQPRNQSTCPVSGSA 50
MW ++AK+ R+ + S TR FS++ +F +L S C G
Sbjct: 40 MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLG----SPCHGKGFR 95
Query: 51 QVGVFTSINELGRSNFSLFEYPFGLNSSLKLARGYASVAEAIVSSSDTEEDCSGG----- 105
+ T E +S L S LARGY SVAE V S+D EE+
Sbjct: 96 CLSGITRREEFSKSERCL---------SGTLARGYTSVAEEEVLSTDVEEEPEVDELLKE 146
Query: 106 --------ANEVKQMVKKEVKGKPLLDRKAKYKDTMLRKRQVKMETEAWEEAAKEYQELL 157
++ +M K++ G + K+++ L +RQVK+ETE WE AA EY ELL
Sbjct: 147 MKKEKKRESHRSWRMKKQDQFGMG----RTKFQN--LWRRQVKIETEEWERAAAEYMELL 200
Query: 158 EDICEQKLVPNLPYMKSLFLGWFEPLKSAIVAEQEVCKKSHRKMTHAPYFNDLPADKMAV 217
D+CEQKL PNLPY+KSLFLGWFEPL+ AI +QE+ + K T+A Y + LPADK++V
Sbjct: 201 TDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISV 260
Query: 218 ITMHKLMGLLMTNHNGIGCARVIHAALQIGEAIENEARIXXXXXXXXXXXXXXXXXXEEP 277
ITMHKLMG LMT + GC +V+HAA +G+AIE E RI ++
Sbjct: 261 ITMHKLMGHLMTGGDN-GCVKVVHAACTVGDAIEQEIRICTFLDKK-----------KKG 308
Query: 278 DGEFYHAAIENGKLSDXXXXXXXXXXXXXXXXXXSSLIKQQKMQQVMGIIKGLDDWKPWG 337
D +EN + LIK+QK+ V I++ D KPW
Sbjct: 309 DDNEESGGVEN---------ETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWI 359
Query: 338 QEARAKVGCRVMQLLIETAYIQSPVSQLGGSPPDIRPAFKHTFKTAMADSQKDIRRYGII 397
+ RAKVG R+++LL+ TAYIQSP Q PD+RPAF HTFK A S R+YG+I
Sbjct: 360 ADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFVHTFKVAKG-SMNSGRKYGVI 418
Query: 398 ECDPLVTKGLEKSAKNMVIPYLPMLVPPNNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVK 457
ECDPLV KGLEKS + V+PY+PMLVPP W+ YDKGAYLFL SY+M+THGAKQQ EA+K
Sbjct: 419 ECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALK 478
Query: 458 RAPYNQLEPIFEALDSLGNTKWRINQRLLDVISQIWTSGGRLADLVDRDDVXXXXXXXXX 517
AP QL+P+FEALD+LG+TKWR+N+R+L V+ +IW+SGG +AD+VDR DV
Sbjct: 479 SAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTE 538
Query: 518 XXXXIRKWKRQVKTIMKENNERHSQRCEIELKLAVARKMKEEKGFYYPHNVDFRGRAYPM 577
++KWK +VK+ K N+ERHSQRC+ ELKL+VARKMK+E+ FYYPHN+DFRGRAYPM
Sbjct: 539 DEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPM 598
Query: 578 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLCYESRVAFTENHL 637
P+LNHLGSDLCRG+LEFAEGRP+G SGLRWLKIHLANLYAGGVDKL + R+AFTENHL
Sbjct: 599 PPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHL 658
Query: 638 DDVFDSADRPLEGRRWWLEAEDPLQCLAACINLSEALRSPTPETTISHVPVHMDGSCNGL 697
DD+FDSADRPLEG RWWL+AEDP QCLA CI+L+EALRSP+PET +SH+P+H DGSCNGL
Sbjct: 659 DDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGL 718
Query: 698 QHYAALGRDKLGAAAVNLVRGDRPADVYSGIASRVLEIMRKDAEKDPETNSXXXXXXXXX 757
QHYAALGRD LGA AVNLV G++PADVYSGIA+RVL+IMR+DA++DPE
Sbjct: 719 QHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLL 778
Query: 758 XQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERCAIEDDSELFSASCYAAKTTLTALE 817
QVDRKLVKQTVMTSVYGVTY+GARDQIKRRLKER D+ E+F A+CYAAK TL A++
Sbjct: 779 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAID 838
Query: 818 EMFEAARSIMSWLADCAKVIASTNEPVRWTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRR 877
EMF+AAR+IM W +CAK+IAS NE VRWTTP+GLP VQPY Q+G ++KTSLQ LSL+
Sbjct: 839 EMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQH 898
Query: 878 ETDKVLVKRQSTAFPPNFVHSLDGSHMMMTAVACKKAGLDFAGVHDSYWTHACDVDEMNR 937
ETD+V+V+RQ TAFPPNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N
Sbjct: 899 ETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNI 958
Query: 938 ILREKFVELYEAPILENLLESFQKSFPKLNFPPLPERGDFDLR 980
ILREKFVELY PILENLLESF++SFP L+FPPLPERGD DL+
Sbjct: 959 ILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLK 1001
>AT2G24120.1 | Symbols: PDE319, SCA3 | DNA/RNA polymerases
superfamily protein | chr2:10249358-10254530 REVERSE
LENGTH=993
Length = 993
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/866 (59%), Positives = 648/866 (74%), Gaps = 31/866 (3%)
Query: 128 KYKDTMLRKRQVKMETEAWEEAAKEYQELLEDICEQKLVPNLPYMKSLFLGWFEPLKSAI 187
K K LR+RQVK ETEAWE EY++L +++CE+ L PNLPY+K +FLGWF+PLK I
Sbjct: 156 KRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVI 215
Query: 188 VAEQEVCKKSHRKM--THAPYFNDLPADKMAVITMHKLMGLLMTNHNGIGCARVIHAALQ 245
EQ++ K +K+ +AP+ LPADKMAVI MHK+MGL+M+ H GC +V+ AA+
Sbjct: 216 EREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHED-GCIQVVQAAVS 274
Query: 246 IGEAIENEARIXXXXXXXXXXXXXXXXXXEEPDGEFYHAAIENGKLSDXXXXXXXXXXXX 305
IG AIE E RI H ++ + ++
Sbjct: 275 IGIAIEQEVRI--------------------------HNFLKRTRKNNAGDSQEELKEKQ 308
Query: 306 XXXXXXSSLIKQQKMQQVMGIIKGLDDWKPWGQEARAKVGCRVMQLLIETAYIQSPVSQL 365
+SLI+++++ + ++K + KPWG+ +AK+G R+++LLIE AY+Q P++Q
Sbjct: 309 LLRKRVNSLIRRKRIIDALKVVKS-EGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQS 367
Query: 366 GGSPPDIRPAFKHTFKTAMA-DSQKDIRRYGIIECDPLVTKGLEKSAKNMVIPYLPMLVP 424
G S P+ RPAF+H FKT K +RRYG+IECD L+ GL+KSAK+M+IPY+PMLVP
Sbjct: 368 GDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVP 427
Query: 425 PNNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVKRAPYNQLEPIFEALDSLGNTKWRINQR 484
P W YDKG YLFLPSY+MRTHG+K+Q +A+K + +FEALD+LGNTKWR+N+
Sbjct: 428 PKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRN 487
Query: 485 LLDVISQIWTSGGRLADLVDRDDVXXXXXXXXXXXXXIRKWKRQVKTIMKENNERHSQRC 544
+LDV+ ++W GG +A LV+R+DV ++ WK + K N ERHS RC
Sbjct: 488 ILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRC 547
Query: 545 EIELKLAVARKMKEEKGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKS 604
++ELKL+VARKMK+E+GFYYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGRPLGKS
Sbjct: 548 DVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKS 607
Query: 605 GLRWLKIHLANLYAGGVDKLCYESRVAFTENHLDDVFDSADRPLEGRRWWLEAEDPLQCL 664
GL WLKIHLANLYAGGV+KL +++R+AF ENHLDD+ DSA+ P+ G+RWWL+AEDP QCL
Sbjct: 608 GLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCL 667
Query: 665 AACINLSEALRSPTPETTISHVPVHMDGSCNGLQHYAALGRDKLGAAAVNLVRGDRPADV 724
AAC+ L++AL+SP+P + ISH+P+H DGSCNGLQHYAALGRD AAAVNLV G++PADV
Sbjct: 668 AACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADV 727
Query: 725 YSGIASRVLEIMRKDAEKDPETNSXXXXXXXXXXQVDRKLVKQTVMTSVYGVTYVGARDQ 784
YS I+ RV EIM+KD+ KDPE+N QVDRKLVKQTVMTSVYGVTYVGAR+Q
Sbjct: 728 YSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQ 787
Query: 785 IKRRLKERCAIEDDSELFSASCYAAKTTLTALEEMFEAARSIMSWLADCAKVIASTNEPV 844
IKRRL+E+ I D+ LF+A+CY+AK TL AL E+FEAAR+IMSWL DCAK+IAS N PV
Sbjct: 788 IKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPV 847
Query: 845 RWTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRRETDKVLVKRQSTAFPPNFVHSLDGSHM 904
RW TP+GLP VQPY + R +I+TSLQVL+L+RE + V V++Q TAFPPNFVHSLDG+HM
Sbjct: 848 RWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHM 907
Query: 905 MMTAVACKKAGLDFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQKSFP 964
MMTAVAC++AGL+FAGVHDSYWTHACDVD MNRILREKFVELY PILE+LL+SFQ+S+P
Sbjct: 908 MMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYP 967
Query: 965 KLNFPPLPERGDFDLREVLNSQYFFN 990
L FPP+P+RGDFDL+EVL SQYFFN
Sbjct: 968 NLVFPPVPKRGDFDLKEVLKSQYFFN 993
>AT2G24120.2 | Symbols: PDE319, SCA3 | DNA/RNA polymerases
superfamily protein | chr2:10250139-10254530 REVERSE
LENGTH=895
Length = 895
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/758 (56%), Positives = 548/758 (72%), Gaps = 31/758 (4%)
Query: 128 KYKDTMLRKRQVKMETEAWEEAAKEYQELLEDICEQKLVPNLPYMKSLFLGWFEPLKSAI 187
K K LR+RQVK ETEAWE EY++L +++CE+ L PNLPY+K +FLGWF+PLK I
Sbjct: 156 KRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVI 215
Query: 188 VAEQEVCKKSHRKM--THAPYFNDLPADKMAVITMHKLMGLLMTNHNGIGCARVIHAALQ 245
EQ++ K +K+ +AP+ LPADKMAVI MHK+MGL+M+ H GC +V+ AA+
Sbjct: 216 EREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHED-GCIQVVQAAVS 274
Query: 246 IGEAIENEARIXXXXXXXXXXXXXXXXXXEEPDGEFYHAAIENGKLSDXXXXXXXXXXXX 305
IG AIE E RI H ++ + ++
Sbjct: 275 IGIAIEQEVRI--------------------------HNFLKRTRKNNAGDSQEELKEKQ 308
Query: 306 XXXXXXSSLIKQQKMQQVMGIIKGLDDWKPWGQEARAKVGCRVMQLLIETAYIQSPVSQL 365
+SLI+++++ + ++K + KPWG+ +AK+G R+++LLIE AY+Q P++Q
Sbjct: 309 LLRKRVNSLIRRKRIIDALKVVKS-EGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQS 367
Query: 366 GGSPPDIRPAFKHTFKTAMA-DSQKDIRRYGIIECDPLVTKGLEKSAKNMVIPYLPMLVP 424
G S P+ RPAF+H FKT K +RRYG+IECD L+ GL+KSAK+M+IPY+PMLVP
Sbjct: 368 GDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVP 427
Query: 425 PNNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVKRAPYNQLEPIFEALDSLGNTKWRINQR 484
P W YDKG YLFLPSY+MRTHG+K+Q +A+K + +FEALD+LGNTKWR+N+
Sbjct: 428 PKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRN 487
Query: 485 LLDVISQIWTSGGRLADLVDRDDVXXXXXXXXXXXXXIRKWKRQVKTIMKENNERHSQRC 544
+LDV+ ++W GG +A LV+R+DV ++ WK + K N ERHS RC
Sbjct: 488 ILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRC 547
Query: 545 EIELKLAVARKMKEEKGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKS 604
++ELKL+VARKMK+E+GFYYPHN+DFRGRAYPMHP+LNHL SDLCRG LEFAEGRPLGKS
Sbjct: 548 DVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKS 607
Query: 605 GLRWLKIHLANLYAGGVDKLCYESRVAFTENHLDDVFDSADRPLEGRRWWLEAEDPLQCL 664
GL WLKIHLANLYAGGV+KL +++R+AF ENHLDD+ DSA+ P+ G+RWWL+AEDP QCL
Sbjct: 608 GLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCL 667
Query: 665 AACINLSEALRSPTPETTISHVPVHMDGSCNGLQHYAALGRDKLGAAAVNLVRGDRPADV 724
AAC+ L++AL+SP+P + ISH+P+H DGSCNGLQHYAALGRD AAAVNLV G++PADV
Sbjct: 668 AACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADV 727
Query: 725 YSGIASRVLEIMRKDAEKDPETNSXXXXXXXXXXQVDRKLVKQTVMTSVYGVTYVGARDQ 784
YS I+ RV EIM+KD+ KDPE+N QVDRKLVKQTVMTSVYGVTYVGAR+Q
Sbjct: 728 YSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQ 787
Query: 785 IKRRLKERCAIEDDSELFSASCYAAKTTLTALEEMFEAARSIMSWLADCAKVIASTNEPV 844
IKRRL+E+ I D+ LF+A+CY+AK TL AL E+FEAAR+IMSWL DCAK+IAS N PV
Sbjct: 788 IKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPV 847
Query: 845 RWTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRRETDKV 882
RW TP+GLP VQPY + R +I+TSLQVL+L+RE + V
Sbjct: 848 RWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTV 885