Miyakogusa Predicted Gene

Lj2g3v1196740.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1196740.1 Non Chatacterized Hit- tr|I1LTT3|I1LTT3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2256
PE=,72.17,2e-19,seg,NULL; Ribosomal_60s,Ribosomal protein 60S; 60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL,CUFF.36614.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family | ...    77   3e-15
AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family | ...    77   3e-15
AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family | ...    77   3e-15
AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family | ...    76   5e-15
AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family | ...    76   5e-15
AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family | ...    75   1e-14
AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family | ...    75   1e-14
AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family | ...    67   2e-12
AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family | ...    63   3e-11
AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family | ...    59   7e-10
AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family | ...    57   3e-09

>AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 45/62 (72%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKVVAAYLLAVL G +SP++ D+K ILGSVG            KEVKGKD AELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 45/62 (72%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKVVAAYLLAVL G +SP++ D+K ILGSVG            KEVKGKD AELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 45/62 (72%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKVVAAYLLAVL G +SP++ D+K ILGSVG            KEVKGKD AELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family |
           chr2:11818696-11819370 FORWARD LENGTH=115
          Length = 115

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 55/115 (47%)

Query: 1   MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
           MKVVAA+LLAVL G +SP+  D+K+ILGSVG            KEVKGKD AELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 115
           KL                                           DDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115


>AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=98
          Length = 98

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 45/62 (72%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKVVAAYLLAVL G +SP++ D+K ILGSVG            KEVKGKD AELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKV AA+LLAVLGGN++PSAD++K+I+G+VG            KEV GKD AELIASGRE
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKV AA+LLAVLGGN++PSAD++K+I+G+VG            KEV GKD AELIASGRE
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family |
           chr2:11818696-11819370 FORWARD LENGTH=127
          Length = 127

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 1   MKVVAAYLLAVLGGNSSPSADDLKNILGS------------VGXXXXXXXXXXXXKEVKG 48
           MKVVAA+LLAVL G +SP+  D+K+ILGS            VG            KEVKG
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIVGAETEDSQIELLLKEVKG 60

Query: 49  KDFAELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDD 108
           KD AELIA+GREKL                                           DDD
Sbjct: 61  KDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDD 120

Query: 109 MGFSLFD 115
           MGFSLF+
Sbjct: 121 MGFSLFE 127


>AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family |
           chr2:11818696-11819370 FORWARD LENGTH=130
          Length = 130

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 54/130 (41%), Gaps = 15/130 (11%)

Query: 1   MKVVAAYLLAVLGGNSSPSADDLKNILGS---------------VGXXXXXXXXXXXXKE 45
           MKVVAA+LLAVL G +SP+  D+K+ILGS                G            KE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 46  VKGKDFAELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 105
           VKGKD AELIA+GREKL                                           
Sbjct: 61  VKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEES 120

Query: 106 DDDMGFSLFD 115
           DDDMGFSLF+
Sbjct: 121 DDDMGFSLFE 130


>AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:10682204-10682551 FORWARD LENGTH=115
          Length = 115

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 40/62 (64%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKV+AA+LLA LGGN +P+++DLK IL SVG              +K  D  ELIA+GRE
Sbjct: 1  MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61 KL 62
          K+
Sbjct: 61 KM 62


>AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:16029913-16030257 REVERSE LENGTH=114
          Length = 114

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 37/62 (59%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKVVAAYLLA L GN +PS  DLK I+ SVG              +K +D  ELIA GRE
Sbjct: 1  MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61 KL 62
          K+
Sbjct: 61 KM 62