Miyakogusa Predicted Gene

Lj2g3v1196520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1196520.1 Non Chatacterized Hit- tr|C0HIK1|C0HIK1_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,67.14,2e-18,seg,NULL;
DUF2232,Protein of unknown function DUF2232, membrane,CUFF.36446.1
         (307 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26180.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   307   5e-84

>AT1G26180.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2232, membrane
           (InterPro:IPR018710); Has 285 Blast hits to 285 proteins
           in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0;
           Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
           105 (source: NCBI BLink). | chr1:9054824-9056526 FORWARD
           LENGTH=289
          Length = 289

 Score =  307 bits (787), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 181/204 (88%)

Query: 104 VFQKTLQLVECSMFAALTGLVYFLSNSLAIENYFSCFFSLPIVISSMRWGVDAGRKTLVS 163
           V+QKTL+LVEC+MFAA+TGLVYFLSNSLAIENYF CFFSLPIVISS+RW +  GRKT+V+
Sbjct: 86  VYQKTLRLVECAMFAAVTGLVYFLSNSLAIENYFGCFFSLPIVISSIRWNIAGGRKTMVA 145

Query: 164 TTILLFVLSGPVKALTYLLKHGIVGYTMGTLWRLETSWNLSIFLCTIVRALGSVGFVLVT 223
           T +LLF+LSGPVKALTY L HG+VG  +G+LW +  SW LSIFLCT+VRALG +G+VL +
Sbjct: 146 TVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCTMVRALGLIGYVLTS 205

Query: 224 SFLIRENILALITINIHASLTFVLTAAGVNSIPSMNVIYTLFGTLVLINCGCFMFLLHML 283
           SFLIRENILA+ITINIHASL++V TA G+N +PSM++IY +FGT++L+N G F+ LLH+L
Sbjct: 206 SFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVLLLNSGFFVLLLHLL 265

Query: 284 YSVFLTRMGMKSSLKLPRWLERAI 307
           YS+FLTR+GMKSSL+LP WL++AI
Sbjct: 266 YSIFLTRLGMKSSLRLPAWLDKAI 289