Miyakogusa Predicted Gene

Lj2g3v1172610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1172610.1 tr|F2CV11|F2CV11_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,33.96,0.000000000002,Sm-like ribonucleoproteins,Like-Sm (LSM)
domain; LSM14,Lsm14 N-terminal; seg,NULL; SCD6
PROTEIN-RELA,CUFF.36432.1
         (480 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26110.2 | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556...   228   1e-59
AT1G26110.1 | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556...   227   1e-59
AT5G45330.1 | Symbols: DCP5-L | decapping 5-like | chr5:18363701...   133   2e-31
AT4G19360.2 | Symbols:  | SCD6 protein-related | chr4:10564159-1...    86   7e-17
AT4G19360.1 | Symbols:  | SCD6 protein-related | chr4:10564159-1...    85   9e-17
AT4G19260.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...    52   1e-06
AT4G19340.1 | Symbols:  | SCD6 protein-related | chr4:10559610-1...    51   1e-06
AT4G19330.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...    50   4e-06

>AT1G26110.2 | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556
           REVERSE LENGTH=605
          Length = 605

 Score =  228 bits (580), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/171 (68%), Positives = 129/171 (75%), Gaps = 11/171 (6%)

Query: 19  YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
           Y+G LISLTSKSEIRYEGILYNINTDESSIGL+NVRSFGTEGRK DG Q+PPSDKVYEYI
Sbjct: 17  YVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYI 76

Query: 79  LFRGSDIKDLQVKSSPPVQ-PTPQVNIDPAIIQSHYPRPATTSTSLPSAVSGSLTDLSSH 137
           LFRG+DIKDLQVK+SPPVQ P   +N DPAIIQSHYP P  TS SLPS  SGSL D+SSH
Sbjct: 77  LFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSH 136

Query: 138 HTAQLGLPGSNFQGPLPLYQPGGNIXXXXXXXXXXXXXXXXXMPVYWQGYY 188
           +  Q G  G  FQ  +PLYQPGGN+                  P+YWQG+Y
Sbjct: 137 N-GQPGQHGMGFQNAMPLYQPGGNLGSWGASPQP---------PMYWQGFY 177



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 362 VSQFSPALMPPVSSKPNVISGSSLPYQTVSQFSSALTPPVSSKPNAISGSGLPNQTVSQF 421
           +S  +P   PP   +   +   SL     ++ S+ L  P+S+KP+ ++G   P QT    
Sbjct: 288 LSNKAPITAPPTLPQDTNLLSFSLSTTRATEASTGL--PLSNKPSVVTGPISPPQTTPLT 345

Query: 422 SPAVVGSSHSIHTDTPAPALVTPGQLLQPGPTKVSYAQPSQAPNKDVEVVQVSSTSSF 479
           S  V G S SI  D P P LVTPGQLLQ G + VS + PS   +KDVEVVQVSS++  
Sbjct: 346 SAPVAGVSSSISQDKPKPLLVTPGQLLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGL 403


>AT1G26110.1 | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556
           REVERSE LENGTH=611
          Length = 611

 Score =  227 bits (579), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/171 (68%), Positives = 129/171 (75%), Gaps = 11/171 (6%)

Query: 19  YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
           Y+G LISLTSKSEIRYEGILYNINTDESSIGL+NVRSFGTEGRK DG Q+PPSDKVYEYI
Sbjct: 17  YVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYI 76

Query: 79  LFRGSDIKDLQVKSSPPVQ-PTPQVNIDPAIIQSHYPRPATTSTSLPSAVSGSLTDLSSH 137
           LFRG+DIKDLQVK+SPPVQ P   +N DPAIIQSHYP P  TS SLPS  SGSL D+SSH
Sbjct: 77  LFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSH 136

Query: 138 HTAQLGLPGSNFQGPLPLYQPGGNIXXXXXXXXXXXXXXXXXMPVYWQGYY 188
           +  Q G  G  FQ  +PLYQPGGN+                  P+YWQG+Y
Sbjct: 137 N-GQPGQHGMGFQNAMPLYQPGGNLGSWGASPQP---------PMYWQGFY 177



 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 362 VSQFSPALMPPVSSKPNVISGSSLPYQTVSQFSSALTPPVSSKPNAISGSGLPNQTVSQF 421
           +S  +P   PP   +   +   SL     ++ S+ L  P+S+KP+ ++G   P QT    
Sbjct: 288 LSNKAPITAPPTLPQDTNLLSFSLSTTRATEASTGL--PLSNKPSVVTGPISPPQTTPLT 345

Query: 422 SPAVVGSSHSIHTDTPAPALVTPGQLLQPGPTKVSYAQPSQAPNKDVEVVQVSSTSSF 479
           S  V G S SI  D P P LVTPGQLLQ G + VS + PS   +KDVEVVQVSS++  
Sbjct: 346 SAPVAGVSSSISQDKPKPLLVTPGQLLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGL 403


>AT5G45330.1 | Symbols: DCP5-L | decapping 5-like |
           chr5:18363701-18366544 REVERSE LENGTH=571
          Length = 571

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 78/104 (75%)

Query: 19  YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
           +IG  ISL SK EIRYEGILY++N  +S++GL+NVRS GTEGRK DG QIPP DKVY+YI
Sbjct: 33  FIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDYI 92

Query: 79  LFRGSDIKDLQVKSSPPVQPTPQVNIDPAIIQSHYPRPATTSTS 122
           LFRGSDIKDLQV  SP  Q   ++  +  + QS + RPA T +S
Sbjct: 93  LFRGSDIKDLQVNPSPSAQSRQEIQSEQDVNQSPHSRPAMTMSS 136


>AT4G19360.2 | Symbols:  | SCD6 protein-related |
          chr4:10564159-10564965 FORWARD LENGTH=171
          Length = 171

 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 19 YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
          YIG  ++L +  +IRYEGIL  +N  ES++GL+NV  +GTEGR  +G QIPP  K+  YI
Sbjct: 27 YIGSFVTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNGVQIPPDTKIQNYI 86

Query: 79 LFRGSDIKDLQVK 91
          LF G++IK++ V+
Sbjct: 87 LFNGNNIKEIIVQ 99


>AT4G19360.1 | Symbols:  | SCD6 protein-related |
          chr4:10564159-10565406 FORWARD LENGTH=268
          Length = 268

 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 53/73 (72%)

Query: 19 YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
          YIG  ++L +  +IRYEGIL  +N  ES++GL+NV  +GTEGR  +G QIPP  K+  YI
Sbjct: 27 YIGSFVTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNGVQIPPDTKIQNYI 86

Query: 79 LFRGSDIKDLQVK 91
          LF G++IK++ V+
Sbjct: 87 LFNGNNIKEIIVQ 99


>AT4G19260.1 | Symbols:  | Galactose oxidase/kelch repeat
          superfamily protein | chr4:10533296-10536262 FORWARD
          LENGTH=288
          Length = 288

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 20 IGCLISLTSKSEIRYEGILYNINTDESSIGLRN-VRSFGTEGRKMDGQQIPPSDK-VYEY 77
          IG  +++ S ++IRYEG++  +N  +S +GL+N VR +G E    + Q++    K V+ +
Sbjct: 20 IGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVENDNEQRVFQVLKEVHSH 79

Query: 78 ILFRGSDIKDL 88
          ++FRGSDIK L
Sbjct: 80 MVFRGSDIKLL 90


>AT4G19340.1 | Symbols:  | SCD6 protein-related |
           chr4:10559610-10560884 FORWARD LENGTH=232
          Length = 232

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 20  IGCLISLTSKSEIRYEGILYNINTDESSIGLRN-VRSFGTEGRKMDGQQIPPSDK-VYEY 77
           IG  +++ S ++IRYEG++  +N  +S +GL+N VR +G E    + Q++    K V+ +
Sbjct: 20  IGKFVAVLSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVENDNEQRVFQVLKEVHSH 79

Query: 78  ILFRGSDIKDLQVKSSPPVQPTPQVNIDP 106
           ++FRGSDIK L  + +  ++    + I P
Sbjct: 80  MVFRGSDIKLLAAQETLFLKLKLVILIAP 108


>AT4G19330.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr4:10554982-10558675 FORWARD
           LENGTH=537
          Length = 537

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 22/98 (22%)

Query: 20  IGCLISLTSKSEIRYEGILYNINTDESSIGLRN---------------------VRSFGT 58
           IG  +++ S ++IRYEG++  +N  +S +GL+N                     VR +G 
Sbjct: 20  IGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNGNNSIPNPLQDLLFMIFFFSIVRVYGR 79

Query: 59  EGRKMDGQQIPPSDK-VYEYILFRGSDIKDLQVKSSPP 95
           E    + Q++    K V+ +++FRGSDIK ++V S PP
Sbjct: 80  EVENDNEQRVFQVLKEVHSHMVFRGSDIKSVEVLSLPP 117