Miyakogusa Predicted Gene
- Lj2g3v1172580.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1172580.3 Non Chatacterized Hit- tr|J3N0F1|J3N0F1_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G2,34.17,3e-18,seg,NULL; coiled-coil,NULL,CUFF.36377.3
(235 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25680.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 246 1e-65
AT5G23890.1 | Symbols: | LOCATED IN: mitochondrion, chloroplast... 83 2e-16
AT5G52410.1 | Symbols: | CONTAINS InterPro DOMAIN/s: S-layer ho... 83 2e-16
AT5G52410.2 | Symbols: | INVOLVED IN: biological_process unknow... 82 3e-16
>AT3G25680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: S-layer homology domain (InterPro:IPR001119);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065
proteins in 355 species: Archae - 39; Bacteria - 284;
Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45;
Other Eukaryotes - 575 (source: NCBI BLink). |
chr3:9349693-9352258 FORWARD LENGTH=558
Length = 558
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 172/238 (72%), Gaps = 3/238 (1%)
Query: 1 MDVKEIT---SLAVYVDILAGDRSILRKVFGQSKRLQPNKPATKAQAAVALTSGRMMEAI 57
+D K I +L ++D L GD+S +R VFG+ KR QPN+P TKAQAAVALTSG+M++AI
Sbjct: 321 IDTKNINPDMALGFFLDFLMGDKSTIRNVFGRIKRFQPNRPVTKAQAAVALTSGKMVKAI 380
Query: 58 SAELLRIEAENSARQAAAEEIRSELLSRGDIQKFWDLKLSEEKSRGFDAERLYLDAVNNL 117
+AEL R+EAE+ +++A EEIRSELL +G+I++FWD K+ E+SRGF+ E LYL VN +
Sbjct: 381 TAELSRLEAESLSQKAETEEIRSELLEKGEIRQFWDEKIQAERSRGFEMEELYLSRVNEV 440
Query: 118 EEETINQDKIHAEYLKEKEAMDCQKQLLLTLKKEVDEISEKLASERVIYVDEKQIVHKLL 177
EEE Q+K AE LKEK A+DCQKQLL +L +E+DE+S++L S++ +Y+ E + ++L
Sbjct: 441 EEEKTTQEKWSAERLKEKAAIDCQKQLLNSLTEEIDEMSQRLISDKSVYLTEHSKLQEML 500
Query: 178 KDLEFKHEEMLDTKSTLEAEKEALQILRSWVEDEARRSQXXXXXXXXXXXXWKWDDQA 235
DL+ K E ++D +S LEAE EAL+ILRSW+EDE + SQ WKW+D A
Sbjct: 501 SDLQSKLESLIDKRSILEAEVEALRILRSWIEDEGKASQARAKVLEEAGRRWKWNDNA 558
>AT5G23890.1 | Symbols: | LOCATED IN: mitochondrion, chloroplast
thylakoid membrane, chloroplast, plastid, chloroplast
envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s:
S-layer homology domain (InterPro:IPR001119); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:8058789-8063005
FORWARD LENGTH=946
Length = 946
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 120/209 (57%), Gaps = 4/209 (1%)
Query: 10 AVYVDILAGDRSILRKVFGQSKRLQPNKPATKAQAAVALTSGRMMEAISAELLRIEAENS 69
++ D+ G++ I FG ++ QP+KP TK QAA+AL+SG + +S EL RIEAE+
Sbjct: 589 SIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIALSSGEASDIVSEELARIEAESM 648
Query: 70 ARQA--AAEEIRSELLSRGDIQKFWDLKLSEEKSRGFDAERLYLDAVNNLEEETINQDKI 127
A +A A + +E+ D+ ++ +LS E+ + E++ A LE+ +++
Sbjct: 649 AEKAVSAHNALVAEV--EKDVNASFEKELSMEREKIEAVEKMAELAKVELEQLREKREEE 706
Query: 128 HAEYLKEKEAMDCQKQLLLTLKKEVDEISEKLASERVIYVDEKQIVHKLLKDLEFKHEEM 187
+ +KE+ A++ + ++L L+++ +E E L S + EK+ V L K+ E + + +
Sbjct: 707 NLALVKERAAVESEMEVLSRLRRDAEEKLEDLMSNKAEITFEKERVFNLRKEAEEESQRI 766
Query: 188 LDTKSTLEAEKEALQILRSWVEDEARRSQ 216
+ LE E++AL + RSW E+EA++++
Sbjct: 767 SKLQYELEVERKALSMARSWAEEEAKKAR 795
>AT5G52410.1 | Symbols: | CONTAINS InterPro DOMAIN/s: S-layer
homology domain (InterPro:IPR001119); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23890.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:21276996-21279293 FORWARD LENGTH=510
Length = 510
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 4/209 (1%)
Query: 10 AVYVDILAGDRSILRKVFGQSKRLQPNKPATKAQAAVALTSGRMMEAISAELLRIEAENS 69
A+ D+ AG+ I FG+++ QP+K TKAQ AV+L G E + EL RIEAE
Sbjct: 150 ALIADLSAGEHGITALSFGRTRLFQPSKAVTKAQTAVSLAIGDAFEVVGEELARIEAEAM 209
Query: 70 ARQAAAEEIRSELLSR--GDIQKFWDLKLSEEKSRGFDAERLYLDAVNNLEEETINQDKI 127
A +EL+++ DI ++ +L EK E+L +A + L + +++
Sbjct: 210 AENVVC--AHNELVAQVEKDINASFEKELLREKEIVDAVEKLAEEAKSELARLRVEKEEE 267
Query: 128 HAEYLKEKEAMDCQKQLLLTLKKEVDEISEKLASERVIYVDEKQIVHKLLKDLEFKHEEM 187
+E+ +++ + + L ++ E++E + LAS + EK+ +L K +E +++E+
Sbjct: 268 TLALERERTSIETEMEALARIRNELEEQLQSLASNKAEMSYEKERFDRLQKQVEDENQEI 327
Query: 188 LDTKSTLEAEKEALQILRSWVEDEARRSQ 216
L ++ LE E+ AL I R W +DEARR++
Sbjct: 328 LRLQNELEVERNALSIARDWAKDEARRAR 356
>AT5G52410.2 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 13 plant
structures; EXPRESSED DURING: 6 growth stages; CONTAINS
InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23890.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr5:21275981-21279293 FORWARD
LENGTH=761
Length = 761
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 4/209 (1%)
Query: 10 AVYVDILAGDRSILRKVFGQSKRLQPNKPATKAQAAVALTSGRMMEAISAELLRIEAENS 69
A+ D+ AG+ I FG+++ QP+K TKAQ AV+L G E + EL RIEAE
Sbjct: 401 ALIADLSAGEHGITALSFGRTRLFQPSKAVTKAQTAVSLAIGDAFEVVGEELARIEAEAM 460
Query: 70 ARQAAAEEIRSELLSR--GDIQKFWDLKLSEEKSRGFDAERLYLDAVNNLEEETINQDKI 127
A +EL+++ DI ++ +L EK E+L +A + L + +++
Sbjct: 461 AENVVC--AHNELVAQVEKDINASFEKELLREKEIVDAVEKLAEEAKSELARLRVEKEEE 518
Query: 128 HAEYLKEKEAMDCQKQLLLTLKKEVDEISEKLASERVIYVDEKQIVHKLLKDLEFKHEEM 187
+E+ +++ + + L ++ E++E + LAS + EK+ +L K +E +++E+
Sbjct: 519 TLALERERTSIETEMEALARIRNELEEQLQSLASNKAEMSYEKERFDRLQKQVEDENQEI 578
Query: 188 LDTKSTLEAEKEALQILRSWVEDEARRSQ 216
L ++ LE E+ AL I R W +DEARR++
Sbjct: 579 LRLQNELEVERNALSIARDWAKDEARRAR 607