Miyakogusa Predicted Gene

Lj2g3v1172460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1172460.1 Non Chatacterized Hit- tr|C0JP31|C0JP31_LOTJA
Putative basic helix-loop-helix protein BHLH25
OS=Lotu,99.67,0,seg,NULL; HLH,Helix-loop-helix domain; STEROL
REGULATORY ELEMENT-BINDING PROTEIN,NULL; no descriptio,CUFF.36367.1
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   238   5e-63
AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic helix-loop-h...   189   1e-48
AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   101   8e-22
AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    96   3e-20
AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    79   4e-15
AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    65   6e-11

>AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25861289-25862882 FORWARD
           LENGTH=368
          Length = 368

 Score =  238 bits (606), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 146/208 (70%), Gaps = 16/208 (7%)

Query: 85  YAGFFNRRVP---SLQFAYEG----PSSDHH----LRIISDALVGPMVQTGSVPYGLQAE 133
           Y  FFNR       LQF YEG     S+ HH    LRI+S+AL GP+VQ GS P+GLQAE
Sbjct: 99  YGSFFNRSRAHHQGLQFGYEGFGGATSAAHHHHEQLRILSEAL-GPVVQAGSGPFGLQAE 157

Query: 134 LGKMTAQEIMEAKALXXXXXXXXXXXXXXXXINNHLAKLRSLLPNTTKTDKASLLAEVIQ 193
           LGKMTAQEIM+AKAL                INNHLAKLRS+LPNTTKTDKASLLAEVIQ
Sbjct: 158 LGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQ 217

Query: 194 HVKELKRQTSLIAETSPVPTEADELTVDAADE----DGRFVIKASLCCEDRSDLLPDXXX 249
           HVKELKR+TS+I+ET+ VPTE+DELTV   +E    DGRFVIKASLCCEDRSDLLPD   
Sbjct: 218 HVKELKRETSVISETNLVPTESDELTVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIK 277

Query: 250 XXXXXXXXXXXXEISTLGGRVKNVLFIT 277
                       EI+T+GGRVKNVLF+T
Sbjct: 278 TLKAMRLKTLKAEITTVGGRVKNVLFVT 305


>AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic
           helix-loop-helix 32 | chr3:9369598-9371096 FORWARD
           LENGTH=344
          Length = 344

 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 147/244 (60%), Gaps = 22/244 (9%)

Query: 49  LNMFPEV-PWSMNPVHSFNPVRDHEXXXXXXXXXXXXYAGFFNRRVPSLQ--------FA 99
           L+  P++ PWS   + SF+P+                   +FNRR  S          F 
Sbjct: 25  LHHHPQILPWSSTSLPSFDPLH-----FPSNPTRYSDPVHYFNRRASSSSSSFDYNDGFV 79

Query: 100 YEGPSSDH---HLRIISDALVGPMVQTGSVPYGLQAE-LGKMTAQEIMEAKALXXXXXXX 155
              PS DH   HLRI+S+AL GP+++ GS  +G   E +GK++AQE+M+AKAL       
Sbjct: 80  SPPPSMDHPQNHLRILSEAL-GPIMRRGS-SFGFDGEIMGKLSAQEVMDAKALAASKSHS 137

Query: 156 XXXXXXXXXINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEA 215
                    IN HLAKLRS+LPNTTKTDKASLLAEVIQH+KELKRQTS I +T  VPTE 
Sbjct: 138 EAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDTYQVPTEC 197

Query: 216 DELTVDAA--DEDGRFVIKASLCCEDRSDLLPDXXXXXXXXXXXXXXXEISTLGGRVKNV 273
           D+LTVD++  DE+G  VI+AS CC+DR+DL+ D               EI+T+GGRVKN+
Sbjct: 198 DDLTVDSSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNI 257

Query: 274 LFIT 277
           LF++
Sbjct: 258 LFLS 261


>AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17143360-17144686 FORWARD
           LENGTH=253
          Length = 253

 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 7/118 (5%)

Query: 165 INNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAET--SPVPTEADELTV-- 220
           IN+HL KLR++L   +KTDKA+LLA+V+Q V+ELK+QT   +++  + +P+E DE++V  
Sbjct: 82  INSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSDQTLLPSETDEISVLH 141

Query: 221 --DAADEDGRFVIKASLCCEDRSDLLPDXXXXXXXXXXXXXXXEISTLGGRVKNVLFI 276
             D ++ DG  + KASLCCEDRSDLLPD               E+ T+GGR ++VL +
Sbjct: 142 FGDYSN-DGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVV 198


>AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:21029202-21030618 REVERSE
           LENGTH=230
          Length = 230

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 6/140 (4%)

Query: 142 IMEAKALXXXXXXXXXXXXXXXXINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQ 201
           + E KAL                IN+HL KLR LL   +KTDK++LLA+V+Q VKELK+Q
Sbjct: 37  VYEDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQ 96

Query: 202 TSLIAETSPVPTEADELTV----DAAD-EDGRFVIKASLCCEDRSDLLPDXXXXXXXXXX 256
           T  I + + +P+E DE++V    D +  +D R + K S CCEDR +LL D          
Sbjct: 97  TLEITDET-IPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSLQM 155

Query: 257 XXXXXEISTLGGRVKNVLFI 276
                +++T+GGR +NVL +
Sbjct: 156 ETLFADMTTVGGRTRNVLVV 175


>AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:16791098-16792027 FORWARD
           LENGTH=254
          Length = 254

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 14/117 (11%)

Query: 165 INNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPV----PTEADELTV 220
           IN+HL  LR L+PN+ K DKA+LLA VI+ VKELK++    A  SP+    PTEADE+TV
Sbjct: 78  INSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQK----AAESPIFQDLPTEADEVTV 133

Query: 221 ------DAADEDGRFVIKASLCCEDRSDLLPDXXXXXXXXXXXXXXXEISTLGGRVK 271
                 D        + KAS CCED+ + + +               EI ++GGR++
Sbjct: 134 QPETISDFESNTNTIIFKASFCCEDQPEAISEIIRVLTKLQLETIQAEIISVGGRMR 190


>AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
            superfamily protein | chr4:17876535-17882569 FORWARD
            LENGTH=1513
          Length = 1513

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 165  INNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAAD 224
            IN+  A LR++LPN  K DKAS+L E +++  ELK+   ++ +    P+  D L +D  +
Sbjct: 1364 INSQFATLRTILPNLVKQDKASVLGETVRYFNELKK---MVQDIPTTPSLEDNLRLDHCN 1420

Query: 225  EDGRFVIKASLCCEDRSDLLPDXXXXXXXXXXXXXXXEISTLGGRVKNVLFI 276
             + R + +    C DR  L+ +               EI T+GGR K  LF+
Sbjct: 1421 -NNRDLARVVFSCSDREGLMSEVAESMKAVKAKAVRAEIMTVGGRTKCALFV 1471