Miyakogusa Predicted Gene

Lj2g3v1168730.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1168730.4 Non Chatacterized Hit- tr|I1MRF4|I1MRF4_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,51.35,0.00000000005,seg,NULL,CUFF.36336.4
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |...    65   8e-12
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |...    65   8e-12
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |...    65   8e-12
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c...    65   9e-12
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c...    65   1e-11
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat...    47   3e-06
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat...    45   7e-06

>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1057
          Length = 1057

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLM+ GY + RI+ N  G+ R ASI  +                  + IN
Sbjct: 515 MTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 574

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 575 LATADVVILYDSDW 588


>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1056
          Length = 1056

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLM+ GY + RI+ N  G+ R ASI  +                  + IN
Sbjct: 515 MTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 574

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 575 LATADVVILYDSDW 588


>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1055
          Length = 1055

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLM+ GY + RI+ N  G+ R ASI  +                  + IN
Sbjct: 515 MTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 574

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 575 LATADVVILYDSDW 588


>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
           chr5:6196190-6202058 REVERSE LENGTH=1072
          Length = 1072

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 43/74 (58%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLM+ GYQ+ RI+ N  G+ R ASI  +                  + IN
Sbjct: 520 MTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 579

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 580 LATADVVILYDSDW 593


>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
           chr5:6196190-6202058 REVERSE LENGTH=1069
          Length = 1069

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 43/74 (58%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLM+ GYQ+ RI+ N  G+ R ASI  +                  + IN
Sbjct: 520 MTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 579

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 580 LATADVVILYDSDW 593


>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
           | chr4:15431528-15438443 FORWARD LENGTH=1161
          Length = 1161

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 18/70 (25%)

Query: 5   LYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAINLATA 46
           LY+LEDY  F  + + RI+  I G  R   I  F                  + INLATA
Sbjct: 512 LYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATA 571

Query: 47  DIDILYHSDW 56
           D  I+Y SDW
Sbjct: 572 DTVIIYDSDW 581


>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
           | chr4:15431528-15438443 FORWARD LENGTH=1202
          Length = 1202

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 18/70 (25%)

Query: 5   LYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAINLATA 46
           LY+LEDY  F  + + RI+  I G  R   I  F                  + INLATA
Sbjct: 553 LYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATA 612

Query: 47  DIDILYHSDW 56
           D  I+Y SDW
Sbjct: 613 DTVIIYDSDW 622