Miyakogusa Predicted Gene

Lj2g3v1155600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1155600.1 Non Chatacterized Hit- tr|I1L4D0|I1L4D0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,64.29,3e-19,seg,NULL; HEAVY METAL TRANSPORT/DETOXIFICATION
PROTEIN,NULL; COPPER TRANSPORT PROTEIN ATOX1-RELATED,,CUFF.36324.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25855.1 | Symbols:  | Copper transport protein family | chr3...    90   3e-19

>AT3G25855.1 | Symbols:  | Copper transport protein family |
          chr3:9459608-9460267 REVERSE LENGTH=112
          Length = 112

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 59/75 (78%), Gaps = 1/75 (1%)

Query: 21 MSEQ-YCCMIMRINVDCNACCXXXXXXXXXMKVIETHLIEKQQRRVCVCGRFVPADVAIK 79
          MSE+  CC++MRIN+DCNACC         MK ++TH+I K++R+V +CGRF P+DVA+K
Sbjct: 1  MSEKKQCCVVMRINLDCNACCRKARRIIINMKEVDTHMINKKERQVILCGRFRPSDVALK 60

Query: 80 IQKKLNRRVEILEVQ 94
          +Q+K+ RRVEILEV+
Sbjct: 61 LQRKMKRRVEILEVE 75