Miyakogusa Predicted Gene

Lj2g3v1108490.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1108490.3 tr|B9HBI4|B9HBI4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_763645 PE=4 SV=1,65.85,0.00004,
,CUFF.36277.3
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28180.1 | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 | Cellul...    47   2e-06
AT2G24630.1 | Symbols: ATCSLC08, CSLC08, ATCSLC8 | Glycosyl tran...    47   3e-06
AT4G31590.1 | Symbols: ATCSLC05, CSLC05, ATCSLC5, CSLC5 | Cellul...    47   3e-06

>AT3G28180.1 | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 |
           Cellulose-synthase-like C4 | chr3:10506110-10509067
           FORWARD LENGTH=673
          Length = 673

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 19  FCLCLPAILTSNIAFSKKANFIFLFFLLRKIVQHLVMMRLFVV 61
           F LCLP+I+ S I+  KKAN IFLFFLLRK++       LF +
Sbjct: 439 FRLCLPSIIKSKISVWKKANLIFLFFLLRKLILPFYSFTLFCI 481


>AT2G24630.1 | Symbols: ATCSLC08, CSLC08, ATCSLC8 | Glycosyl
           transferase family 2 protein | chr2:10471558-10473984
           REVERSE LENGTH=690
          Length = 690

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 28/43 (65%)

Query: 19  FCLCLPAILTSNIAFSKKANFIFLFFLLRKIVQHLVMMRLFVV 61
           F LCL +ILTS IA  KKAN I LFFLLRK++       LF V
Sbjct: 467 FRLCLRSILTSKIAMWKKANLILLFFLLRKLILPFYSFTLFCV 509


>AT4G31590.1 | Symbols: ATCSLC05, CSLC05, ATCSLC5, CSLC5 |
           Cellulose-synthase-like C5 | chr4:15309889-15312336
           REVERSE LENGTH=692
          Length = 692

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 28/43 (65%)

Query: 19  FCLCLPAILTSNIAFSKKANFIFLFFLLRKIVQHLVMMRLFVV 61
           F LCL +ILTS IA  KKAN I LFFLLRK++       LF +
Sbjct: 467 FRLCLGSILTSKIAIWKKANLILLFFLLRKLILPFYSFTLFCI 509