Miyakogusa Predicted Gene
- Lj2g3v1106410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1106410.1 tr|A8NG41|A8NG41_COPC7 Transcription/repair
factor TFIIH subunit Tfb3 OS=Coprinopsis cinerea
(strain,59.49,6e-17,seg,NULL; MAT1,Cdk-activating kinase assembly
factor MAT1, centre; TRANSCRIPTION/REPAIR FACTOR TFIIH,CUFF.36273.1
(186 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30820.3 | Symbols: | cyclin-dependent kinase-activating kin... 153 8e-38
AT4G30820.2 | Symbols: | cyclin-dependent kinase-activating kin... 153 8e-38
AT4G30820.1 | Symbols: | cyclin-dependent kinase-activating kin... 153 8e-38
>AT4G30820.3 | Symbols: | cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related | chr4:15007144-15008378 FORWARD
LENGTH=178
Length = 178
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 11/187 (5%)
Query: 1 MVISSTNPH-NKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAI 59
MV+ S + H NKEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+G++V AI
Sbjct: 1 MVMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAI 60
Query: 60 EAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQDFGAVPQGQYAP 119
E KI +Y +EN+EQIM+N D ++ A
Sbjct: 61 EQKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTA------GT 114
Query: 120 TFAGQPRPTGMAPQPLPL-GGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRALEE 178
T+ RPTGM PQP+P+ GG++ YA +D+ T R+ +SLEIS++RALEE
Sbjct: 115 TYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEE 171
Query: 179 AFGSMWV 185
AF S+WV
Sbjct: 172 AFASIWV 178
>AT4G30820.2 | Symbols: | cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related | chr4:15007144-15008378 FORWARD
LENGTH=178
Length = 178
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 11/187 (5%)
Query: 1 MVISSTNPH-NKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAI 59
MV+ S + H NKEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+G++V AI
Sbjct: 1 MVMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAI 60
Query: 60 EAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQDFGAVPQGQYAP 119
E KI +Y +EN+EQIM+N D ++ A
Sbjct: 61 EQKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTA------GT 114
Query: 120 TFAGQPRPTGMAPQPLPL-GGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRALEE 178
T+ RPTGM PQP+P+ GG++ YA +D+ T R+ +SLEIS++RALEE
Sbjct: 115 TYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEE 171
Query: 179 AFGSMWV 185
AF S+WV
Sbjct: 172 AFASIWV 178
>AT4G30820.1 | Symbols: | cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related | chr4:15007144-15008378 FORWARD
LENGTH=178
Length = 178
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 11/187 (5%)
Query: 1 MVISSTNPH-NKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAI 59
MV+ S + H NKEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+G++V AI
Sbjct: 1 MVMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAI 60
Query: 60 EAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQDFGAVPQGQYAP 119
E KI +Y +EN+EQIM+N D ++ A
Sbjct: 61 EQKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTA------GT 114
Query: 120 TFAGQPRPTGMAPQPLPL-GGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRALEE 178
T+ RPTGM PQP+P+ GG++ YA +D+ T R+ +SLEIS++RALEE
Sbjct: 115 TYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEE 171
Query: 179 AFGSMWV 185
AF S+WV
Sbjct: 172 AFASIWV 178