Miyakogusa Predicted Gene

Lj2g3v1106410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1106410.1 tr|A8NG41|A8NG41_COPC7 Transcription/repair
factor TFIIH subunit Tfb3 OS=Coprinopsis cinerea
(strain,59.49,6e-17,seg,NULL; MAT1,Cdk-activating kinase assembly
factor MAT1, centre; TRANSCRIPTION/REPAIR FACTOR TFIIH,CUFF.36273.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30820.3 | Symbols:  | cyclin-dependent kinase-activating kin...   153   8e-38
AT4G30820.2 | Symbols:  | cyclin-dependent kinase-activating kin...   153   8e-38
AT4G30820.1 | Symbols:  | cyclin-dependent kinase-activating kin...   153   8e-38

>AT4G30820.3 | Symbols:  | cyclin-dependent kinase-activating kinase
           assembly factor-related / CDK-activating kinase assembly
           factor-related | chr4:15007144-15008378 FORWARD
           LENGTH=178
          Length = 178

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 11/187 (5%)

Query: 1   MVISSTNPH-NKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAI 59
           MV+ S + H NKEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+G++V AI
Sbjct: 1   MVMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAI 60

Query: 60  EAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQDFGAVPQGQYAP 119
           E KI +Y +EN+EQIM+N                        D  ++    A        
Sbjct: 61  EQKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTA------GT 114

Query: 120 TFAGQPRPTGMAPQPLPL-GGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRALEE 178
           T+    RPTGM PQP+P+ GG++   YA +D+ T R+          +SLEIS++RALEE
Sbjct: 115 TYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEE 171

Query: 179 AFGSMWV 185
           AF S+WV
Sbjct: 172 AFASIWV 178


>AT4G30820.2 | Symbols:  | cyclin-dependent kinase-activating kinase
           assembly factor-related / CDK-activating kinase assembly
           factor-related | chr4:15007144-15008378 FORWARD
           LENGTH=178
          Length = 178

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 11/187 (5%)

Query: 1   MVISSTNPH-NKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAI 59
           MV+ S + H NKEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+G++V AI
Sbjct: 1   MVMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAI 60

Query: 60  EAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQDFGAVPQGQYAP 119
           E KI +Y +EN+EQIM+N                        D  ++    A        
Sbjct: 61  EQKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTA------GT 114

Query: 120 TFAGQPRPTGMAPQPLPL-GGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRALEE 178
           T+    RPTGM PQP+P+ GG++   YA +D+ T R+          +SLEIS++RALEE
Sbjct: 115 TYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEE 171

Query: 179 AFGSMWV 185
           AF S+WV
Sbjct: 172 AFASIWV 178


>AT4G30820.1 | Symbols:  | cyclin-dependent kinase-activating kinase
           assembly factor-related / CDK-activating kinase assembly
           factor-related | chr4:15007144-15008378 FORWARD
           LENGTH=178
          Length = 178

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 11/187 (5%)

Query: 1   MVISSTNPH-NKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAI 59
           MV+ S + H NKEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+G++V AI
Sbjct: 1   MVMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAI 60

Query: 60  EAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQDFGAVPQGQYAP 119
           E KI +Y +EN+EQIM+N                        D  ++    A        
Sbjct: 61  EQKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTA------GT 114

Query: 120 TFAGQPRPTGMAPQPLPL-GGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRALEE 178
           T+    RPTGM PQP+P+ GG++   YA +D+ T R+          +SLEIS++RALEE
Sbjct: 115 TYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEE 171

Query: 179 AFGSMWV 185
           AF S+WV
Sbjct: 172 AFASIWV 178