Miyakogusa Predicted Gene

Lj2g3v1104020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1104020.1 Non Chatacterized Hit- tr|G6CWG5|G6CWG5_DANPL
Uncharacterized protein OS=Danaus plexippus PE=4
SV=1,46.88,3e-18,DUF2039,Protein of unknown function DUF2039;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.36243.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02220.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   172   4e-44

>AT3G02220.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2039
           (InterPro:IPR019351); Has 215 Blast hits to 215 proteins
           in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125;
           Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes -
           44 (source: NCBI BLink). | chr3:412210-413536 REVERSE
           LENGTH=227
          Length = 227

 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 91/113 (80%)

Query: 7   KTGPPKHQNKVAWKPNAGRKINETEVGGRFRPLSEITGVCPRCRDQIDWKRRYGKYKPLA 66
           + GPPKHQNK AW P AG KINETEVGGRFRPLSEITGVC RCR+QI WKR+YGKYK L 
Sbjct: 4   RQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYKTLT 63

Query: 67  EPAKCQRCTKRAVRQAYHNLCSGCAKEHRVCAKCCCSVARIVGRPLRTLGREK 119
           E  KCQ+CTKR VRQAYH LC GCAKE +VCAKCC SV +I+GR +  +  E+
Sbjct: 64  EATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSVDQILGRDIYEVEAEQ 116