Miyakogusa Predicted Gene

Lj2g3v1080750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1080750.1 tr|G7IP47|G7IP47_MEDTR DNA-directed RNA
polymerase subunit beta OS=Medicago truncatula
GN=MTR_2g0189,62.82,4e-19,N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE RICH
REPEAT PROTEIN,NULL; RNI-like,NULL; no description,NULL,CUFF.36211.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05460.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   139   1e-33
AT4G05470.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   139   1e-33
AT4G05475.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   139   1e-33
AT4G03630.1 | Symbols:  | RNI-like superfamily protein | chr4:16...   134   5e-32
AT4G05490.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   132   1e-31
AT5G52480.1 | Symbols:  | RNI-like superfamily protein | chr5:21...   120   7e-28
AT4G05497.1 | Symbols:  | RNI-like superfamily protein | chr4:27...   116   1e-26
AT5G52480.2 | Symbols:  | RNI-like superfamily protein | chr5:21...    94   4e-20
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    74   5e-14
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    74   5e-14
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    74   5e-14
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    74   5e-14
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-...    74   5e-14
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5...    71   4e-13
AT4G30640.1 | Symbols:  | RNI-like superfamily protein | chr4:14...    65   4e-11
AT3G48880.2 | Symbols:  | RNI-like superfamily protein | chr3:18...    47   8e-06
AT3G48880.1 | Symbols:  | RNI-like superfamily protein | chr3:18...    47   8e-06

>AT4G05460.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2761106-2762400 REVERSE LENGTH=302
          Length = 302

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 7/200 (3%)

Query: 1   MWRTIDLTNQPPSYPHTAMLK-LCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLR 59
           MWR ID+ N          L+ +CR+A+++S G L DI I +F T ++L YIA   S+LR
Sbjct: 59  MWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLR 118

Query: 60  RMGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLFI 119
            + L+  S  I+D G +E V KLPL EE E+S+       L ++GQ C  +K +K     
Sbjct: 119 SLRLIRCS-QITDDGFVEAVVKLPL-EELELSYCSFSVESLRVVGQCCLNMKTLKLN--- 173

Query: 120 GFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVDL 179
             P+  E +DDA  IA+TMP+LRHLQL  N L++ GL AILD C +LE LDLR C NV+L
Sbjct: 174 KHPQK-ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNL 232

Query: 180 SGSLGERCCKQIKYLYLPED 199
            G L +RC + +K +  P D
Sbjct: 233 VGDLQKRCFESVKVVRHPND 252


>AT4G05470.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2763256-2765351 REVERSE LENGTH=304
          Length = 304

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 20/216 (9%)

Query: 1   MWRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISID-FFCTDEVLKYIADSGSHLR 59
           MWR I+ T     Y +   + +CR+ ++ S G L +I++D  F +D +L YI D   +LR
Sbjct: 86  MWRKIN-TRDCLMY-NFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDR--NLR 141

Query: 60  RMGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKF-TLF 118
            +GL M    ++ +G++  + K+PLLE  E++ +C+ K  L+ IG +CP LK +K  +L 
Sbjct: 142 SLGLGMCFPRVTKLGVVNAIAKIPLLETLEVTHSCI-KLDLKAIGHACPQLKTLKLNSLG 200

Query: 119 IGFPKG-------------FECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRH 165
             +P                EC+DDA  IA++MP+L HLQL+ANRLTN GL AILDGC H
Sbjct: 201 RLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPH 260

Query: 166 LESLDLRGCSNVDLSGSLGERCCKQIKYLYLPEDVS 201
           LE LD+R C  + L G+L +RC + IK L  P D +
Sbjct: 261 LEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDST 296


>AT4G05475.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2765962-2767957 REVERSE LENGTH=309
          Length = 309

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 128/213 (60%), Gaps = 17/213 (7%)

Query: 1   MWRTIDLTN-QPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLR 59
           MWR I+L +     +   +M   CR+ ++ S G L +I+I+ F +D +L YI D   +L+
Sbjct: 80  MWRKINLRDCLMYEFDFESM---CRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLK 136

Query: 60  RMGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLF- 118
            +G+ +    +++ G++  ++KLPLLE   I F+   K  L+ IG +CP LK +K     
Sbjct: 137 SLGISIYE-PMTNKGVMNGIEKLPLLETLVI-FHSSIKLDLKAIGHACPQLKTLKLNSLG 194

Query: 119 ---------IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLES- 168
                    +G+    EC+DDA  IA++MP+LRHLQL+ N LTN GL AILDGC HLE  
Sbjct: 195 SELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEH 254

Query: 169 LDLRGCSNVDLSGSLGERCCKQIKYLYLPEDVS 201
           LD+R C N++L G+L +RC K+IK L  P D +
Sbjct: 255 LDVRKCFNINLVGNLEKRCMKRIKELRRPHDST 287


>AT4G03630.1 | Symbols:  | RNI-like superfamily protein |
           chr4:1608750-1610037 FORWARD LENGTH=220
          Length = 220

 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 116/193 (60%), Gaps = 6/193 (3%)

Query: 13  SYPHTAMLKLCR---YAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRMGLLMKSWG 69
           +Y  + + +L R   +A+  S G   +I+I+ F TD +L YIAD  S+LR +GL  K   
Sbjct: 16  AYRSSILKRLGRMMCHAVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGL-AKCDQ 74

Query: 70  ISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTL-FIGFPKGFECN 128
           I+ +G+     KLPLLE+ E+S+  +    LE IG +C  LK +K       FP GF  +
Sbjct: 75  ITGMGLFTEAMKLPLLEDLELSYCLIKGKNLEAIGFACLHLKTLKLNCQGFKFP-GFTYD 133

Query: 129 DDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVDLSGSLGERCC 188
            DA  IAK MPELR LQL  NR+++ GL AI DGC HLE LDLR C N++L G L +RC 
Sbjct: 134 HDALGIAKRMPELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCM 193

Query: 189 KQIKYLYLPEDVS 201
           ++IK L  P D +
Sbjct: 194 ERIKDLRRPNDST 206


>AT4G05490.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2771044-2772252 REVERSE LENGTH=307
          Length = 307

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 123/203 (60%), Gaps = 8/203 (3%)

Query: 1   MWRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISID--FFCTDEVLKYIADSGSHL 58
           +WR ID+ N    Y   AM   CR+ ++ S G L + +ID   F T  +L Y+A+  S+L
Sbjct: 67  IWRRIDMRNLRRLYCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNL 126

Query: 59  RRMGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLF 118
           RR  L +K   I+ VG+ E + KLPLLEE E+ +  + +   + IGQ+CP LK +K    
Sbjct: 127 RR--LRVKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKL--- 181

Query: 119 IGFPKGF-ECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNV 177
           +GF     E ++DA  IA TMP L HLQLI+N LTN GL AILDGC HLE LDLR C N+
Sbjct: 182 VGFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNI 241

Query: 178 DLSGSLGERCCKQIKYLYLPEDV 200
           +L G L  +C ++IK    P DV
Sbjct: 242 NLFGDLERQCLERIKDFRCPNDV 264


>AT5G52480.1 | Symbols:  | RNI-like superfamily protein |
           chr5:21296918-21297762 REVERSE LENGTH=241
          Length = 241

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 5/180 (2%)

Query: 22  LCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRMGLLMKSWGISDVGMIELVKK 81
           +CR A+++S G L +I+I  F +D +L YIA+  S+LR + L+     I+D G ++ V K
Sbjct: 18  ICRNAVDRSEGGLLEINIGDFGSDSLLTYIAERSSNLRSLRLMCSE--ITDDGFVQAVVK 75

Query: 82  LPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPEL 141
           LP+LEE E+S   L    ++L G SCP LK +       +    + + DA  IA++MP+L
Sbjct: 76  LPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRLF-YLSSDDDDHDAIAIAESMPKL 134

Query: 142 RHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVDLSGSLGERCCKQIKYLYLPEDVS 201
           RHLQL  N+LT  GL AILDGC HLE LDLR C  ++L G+L +RC ++IK L    D +
Sbjct: 135 RHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGNLEKRCFEKIKDLRRHNDST 192


>AT4G05497.1 | Symbols:  | RNI-like superfamily protein |
           chr4:2777903-2778801 REVERSE LENGTH=246
          Length = 246

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 111/188 (59%), Gaps = 9/188 (4%)

Query: 1   MWRTIDLTNQPPSYPHTAML----KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGS 56
           MWR ID+  +        +      LC  A++ S G L +I+ID+      L YIAD  S
Sbjct: 61  MWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSS 120

Query: 57  HLRRMGLLMKSWGISDVGMIELVKKLPLLEEFEISF-NCLPKNILELIGQSCPFLKVIKF 115
           +LRR+G++  +  +S  G++E   KLPLLEE +I++ + + +  L+++GQSCP L+ +K 
Sbjct: 121 NLRRLGVVDCAPVLSR-GVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKL 179

Query: 116 TLFIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCS 175
               G  K   C+  A  IA+TMP LRHLQL  N L+  GL AIL+GC HL++L L  C 
Sbjct: 180 NC-TGDVKC--CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCL 236

Query: 176 NVDLSGSL 183
           N+++ G +
Sbjct: 237 NINIVGDI 244


>AT5G52480.2 | Symbols:  | RNI-like superfamily protein |
           chr5:21296918-21297529 REVERSE LENGTH=203
          Length = 203

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 5/154 (3%)

Query: 48  LKYIADSGSHLRRMGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSC 107
           L  I    S+LR + L+     I+D G ++ V KLP+LEE E+S   L    ++L G SC
Sbjct: 6   LHTITCRSSNLRSLRLMCSE--ITDDGFVQAVVKLPMLEELEVSGISLSGESMKLAGLSC 63

Query: 108 PFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLE 167
           P LK +       +    + + DA  IA++MP+LRHLQL  N+LT  GL AILDGC HLE
Sbjct: 64  PNLKTLMLNRLF-YLSSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLE 122

Query: 168 SLDLRGCSNVDLSGSLGERCCKQIKYLYLPEDVS 201
            LDLR C  ++L G+L +RC ++IK L    D +
Sbjct: 123 HLDLRQC--INLVGNLEKRCFEKIKDLRRHNDST 154


>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 2   WRTIDLTNQPPSYPHTAML-KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           W+ ID+      +  +  L ++    I +S G L  +S+     D +  +IA     L+ 
Sbjct: 51  WQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKT 110

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNC-LPKNILELIGQSCPFLKVIKFTLF- 118
           + +     G+++ G++ + +KL  L   ++S+ C +    ++ IG+ C  L+     +  
Sbjct: 111 LKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHP 168

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +        +D+A+ IA TMP+L+ L++  +R++ +G+L IL  C  LE L+LRGC +V 
Sbjct: 169 LDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQ 228

Query: 179 LSGSLGERCCKQIKYL 194
           L     +     +K L
Sbjct: 229 LDNKFFKEKFPDMKVL 244


>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 2   WRTIDLTNQPPSYPHTAML-KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           W+ ID+      +  +  L ++    I +S G L  +S+     D +  +IA     L+ 
Sbjct: 51  WQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKT 110

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNC-LPKNILELIGQSCPFLKVIKFTLF- 118
           + +     G+++ G++ + +KL  L   ++S+ C +    ++ IG+ C  L+     +  
Sbjct: 111 LKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHP 168

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +        +D+A+ IA TMP+L+ L++  +R++ +G+L IL  C  LE L+LRGC +V 
Sbjct: 169 LDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQ 228

Query: 179 LSGSLGERCCKQIKYL 194
           L     +     +K L
Sbjct: 229 LDNKFFKEKFPDMKVL 244


>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 2   WRTIDLTNQPPSYPHTAML-KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           W+ ID+      +  +  L ++    I +S G L  +S+     D +  +IA     L+ 
Sbjct: 51  WQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKT 110

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNC-LPKNILELIGQSCPFLKVIKFTLF- 118
           + +     G+++ G++ + +KL  L   ++S+ C +    ++ IG+ C  L+     +  
Sbjct: 111 LKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHP 168

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +        +D+A+ IA TMP+L+ L++  +R++ +G+L IL  C  LE L+LRGC +V 
Sbjct: 169 LDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQ 228

Query: 179 LSGSLGERCCKQIKYL 194
           L     +     +K L
Sbjct: 229 LDNKFFKEKFPDMKVL 244


>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 2   WRTIDLTNQPPSYPHTAML-KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           W+ ID+      +  +  L ++    I +S G L  +S+     D +  +IA     L+ 
Sbjct: 51  WQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKT 110

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNC-LPKNILELIGQSCPFLKVIKFTLF- 118
           + +     G+++ G++ + +KL  L   ++S+ C +    ++ IG+ C  L+     +  
Sbjct: 111 LKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHP 168

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +        +D+A+ IA TMP+L+ L++  +R++ +G+L IL  C  LE L+LRGC +V 
Sbjct: 169 LDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQ 228

Query: 179 LSGSLGERCCKQIKYL 194
           L     +     +K L
Sbjct: 229 LDNKFFKEKFPDMKVL 244


>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
           chr4:5758993-5760108 FORWARD LENGTH=317
          Length = 317

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 5/196 (2%)

Query: 2   WRTIDLTNQPPSYPHTAML-KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           W+ ID+      +  +  L ++    I +S G L  +S+     D +  +IA     L+ 
Sbjct: 51  WQEIDIELWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKT 110

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNC-LPKNILELIGQSCPFLKVIKFTLF- 118
           + +     G+++ G++ + +KL  L   ++S+ C +    ++ IG+ C  L+     +  
Sbjct: 111 LKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHP 168

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +        +D+A+ IA TMP+L+ L++  +R++ +G+L IL  C  LE L+LRGC +V 
Sbjct: 169 LDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQ 228

Query: 179 LSGSLGERCCKQIKYL 194
           L     +     +K L
Sbjct: 229 LDNKFFKEKFPDMKVL 244


>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
           chr5:23449916-23450915 REVERSE LENGTH=300
          Length = 300

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 34/234 (14%)

Query: 1   MWRTIDLTNQPPSYPHTAMLK----------LCRYAIEQSCGHLEDISIDFFCTDEVLKY 50
           +W   DL     SYP +  L           + R  ++ S G L  I +   C+D  L Y
Sbjct: 48  LWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRH-CSDHALSY 106

Query: 51  IADSGSHLRRMGLLMKSWGISDVGMIELVKKLPLLEEFEISF-NCLPKNILELIGQSCPF 109
            AD   +L+ + +   S  ++D  M ++  +   L+E +IS+ + +  + L +IG++CP 
Sbjct: 107 AADRCPNLQVLAI-RSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPN 165

Query: 110 LKVIKFTLF------IG-FPKGF------ECNDDAFVIAKTMPELRHLQLIANRLTNDGL 156
           L+++K  L       IG  P  +      + + +A  I K M  L HL++  +RL+  GL
Sbjct: 166 LRILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGL 225

Query: 157 LAILDGCRHLESLDLRGC---SNVDLSGSLGE-RCCKQIKY--LYLPE--DVSE 202
            +I +GC  LE LDL GC   S+ D++ ++   +  K++K   +Y+P   DV++
Sbjct: 226 ASICEGCPKLEYLDLFGCVHLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQ 279


>AT4G30640.1 | Symbols:  | RNI-like superfamily protein |
           chr4:14952670-14953682 FORWARD LENGTH=301
          Length = 301

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 22/169 (13%)

Query: 24  RYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRMGLLMKSWGISDVGMIELVKKLP 83
           R  +++S G L +I I   CT+  L Y A+   +L  +  +     ++D  M ++    P
Sbjct: 93  RSVVDRSEGGLTEIRIRH-CTERSLSYAAERCPNLEVL-WIKNCPNVTDASMEKIAMNCP 150

Query: 84  LLEEFEISFN-CLPKNILELIGQSCPFLKVIKFTLF-----------------IGFPKGF 125
            L E +IS++  +    L  +G+SC  LK++K  L                    FP+  
Sbjct: 151 NLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVAPLDYLATFPR-- 208

Query: 126 ECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGC 174
             N +A +I K M +L+HL++  + LT  GL ++  GC +LE +DLRGC
Sbjct: 209 YGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGC 257


>AT3G48880.2 | Symbols:  | RNI-like superfamily protein |
           chr3:18127873-18129008 FORWARD LENGTH=309
          Length = 309

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 26/198 (13%)

Query: 1   MWRTIDLTNQPPSY------PHT--------AMLKLCRYAIEQSCGHLEDISIDF--FCT 44
           +W+T+DL+N   S+      P+         A+ ++ + ++  S G    +   F  F +
Sbjct: 53  LWKTVDLSNMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLS 112

Query: 45  DEVLKYIADSGSHLRRMGLLMKSWG-ISDVGMIELVKKLPLLEEFEISFNCLPKNILELI 103
           D+ L Y A+    LRR  +++ +W  I   G+ + ++    LE   +     P  +L  I
Sbjct: 113 DDQLTYTAERCPGLRR--VVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEI 170

Query: 104 GQSCPFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGC 163
            ++C   K +K    +G  + F  N     +   +P ++ L +  + +  + L+ ILDG 
Sbjct: 171 AKNCKNFKELK---IMGPFEVFFAN----TLITCLPNIKTLSIRCSAIKREALMKILDGL 223

Query: 164 RHLESLDLRGCSNVDLSG 181
             LE L++     V+ SG
Sbjct: 224 PSLEVLNISHSHLVEYSG 241


>AT3G48880.1 | Symbols:  | RNI-like superfamily protein |
           chr3:18127873-18129008 FORWARD LENGTH=309
          Length = 309

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 26/198 (13%)

Query: 1   MWRTIDLTNQPPSY------PHT--------AMLKLCRYAIEQSCGHLEDISIDF--FCT 44
           +W+T+DL+N   S+      P+         A+ ++ + ++  S G    +   F  F +
Sbjct: 53  LWKTVDLSNMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLS 112

Query: 45  DEVLKYIADSGSHLRRMGLLMKSWG-ISDVGMIELVKKLPLLEEFEISFNCLPKNILELI 103
           D+ L Y A+    LRR  +++ +W  I   G+ + ++    LE   +     P  +L  I
Sbjct: 113 DDQLTYTAERCPGLRR--VVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEI 170

Query: 104 GQSCPFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGC 163
            ++C   K +K    +G  + F  N     +   +P ++ L +  + +  + L+ ILDG 
Sbjct: 171 AKNCKNFKELK---IMGPFEVFFAN----TLITCLPNIKTLSIRCSAIKREALMKILDGL 223

Query: 164 RHLESLDLRGCSNVDLSG 181
             LE L++     V+ SG
Sbjct: 224 PSLEVLNISHSHLVEYSG 241