Miyakogusa Predicted Gene

Lj2g3v1080740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1080740.1 tr|B9IKX6|B9IKX6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_669059 PE=4
SV=1,57.14,0.00000000000009,seg,NULL; FAMILY NOT
NAMED,NULL,NODE_70679_length_2010_cov_25.096020.path2.1
         (454 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04860.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   154   1e-37
AT3G11760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   146   4e-35
AT2G25460.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2 calcium...   122   3e-28
AT2G10560.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    55   8e-08

>AT5G04860.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G11760.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:1411760-1414459
           REVERSE LENGTH=782
          Length = 782

 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 1/117 (0%)

Query: 331 TSSWGVKEFSSRDGKSKLKTNVFFASFDQRSEKASGESACTVLVALIAHWLHSNKGM-PT 389
             SW  KE  SRDG  KL   VF AS DQRSE+A+GESACT LVA++AHWL SN+ + PT
Sbjct: 428 VGSWETKEIISRDGLMKLTARVFLASIDQRSERAAGESACTALVAVMAHWLGSNRDIIPT 487

Query: 390 RAEFDSLITQGSSEWRRLCNSNYYSKLFPDKHFDLETIIDANLRPWVVLPQKSYTGF 446
           R+EFDSLI +GSSEWR +C +  Y + FPDKHFDLET++ A +RP  V+P++S+ GF
Sbjct: 488 RSEFDSLIREGSSEWRNMCENEEYRERFPDKHFDLETVLQAKVRPICVVPERSFIGF 544


>AT3G11760.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 14 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:3718529-3721123 FORWARD
           LENGTH=702
          Length = 702

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 85/118 (72%), Gaps = 1/118 (0%)

Query: 330 STSSWGVKEFSSRDGKSKLKTNVFFASFDQRSEKASGESACTVLVALIAHWLHSNKG-MP 388
           +  SW  KE  SRDG  KL+T+VF AS DQRSE+A+GESACT LVA+IA W   N   MP
Sbjct: 413 AIGSWEEKEVISRDGHMKLQTSVFLASIDQRSERAAGESACTALVAVIADWFQKNGNLMP 472

Query: 389 TRAEFDSLITQGSSEWRRLCNSNYYSKLFPDKHFDLETIIDANLRPWVVLPQKSYTGF 446
            +++FDSLI +GS EWR LC +  Y + FPDKHFDL+T++ A +RP  V+P KS+ GF
Sbjct: 473 IKSQFDSLIREGSLEWRNLCENETYMQKFPDKHFDLDTVLQAKIRPLTVIPGKSFVGF 530


>AT2G25460.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2
           calcium-dependent membrane targeting
           (InterPro:IPR000008); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G04860.1); Has 108
           Blast hits to 69 proteins in 11 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr2:10833175-10835374 REVERSE LENGTH=423
          Length = 423

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 5/155 (3%)

Query: 299 KTDASKQETSTTDPCPLTKSEEHSLQFYLQDSTSSWGVKEFSSRDGKSKLKTNVFFASFD 358
           + +  + E + T   P  + E+ + +  ++   + W +K+  SRDGKSKLK+ V+ AS D
Sbjct: 249 RREPREDEVTKTSTKPSEELEKPATEIPIE--ANKWVMKDLVSRDGKSKLKSEVYLASID 306

Query: 359 QRSEKASGESACTVLVALIAHWLHSNKGM--PTRAEFDSLITQGSSEWRRLCNSNYYSKL 416
           QRSE+A+GE+AC  +  ++AHW H+N  +  P+   FDSLITQGSS W+ LC+   Y +L
Sbjct: 307 QRSEQAAGEAACAAVAVVVAHWFHANPKLINPSGTAFDSLITQGSSLWQSLCDKESYLRL 366

Query: 417 FPDKHFDLETIIDANLRPWVVLPQKSYTG-FSPLR 450
           FP++HFDLETI+ ANLRP  V   KS+TG FSP R
Sbjct: 367 FPNRHFDLETIVSANLRPVRVCTDKSFTGLFSPER 401


>AT2G10560.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G04860.1); Has 70 Blast hits to 70 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:4109862-4110698 REVERSE
           LENGTH=278
          Length = 278

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 407 LCNSNYYSKLFPDKHFDLETIIDANLRPWVVLPQKSYTGF 446
           +C +  Y + FPDKHFDLET++ A +RP  V+P++++ GF
Sbjct: 1   MCENEEYRERFPDKHFDLETVLQAKVRPICVVPERTFIGF 40