Miyakogusa Predicted Gene

Lj2g3v1079660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1079660.1 Non Chatacterized Hit- tr|D8TCD1|D8TCD1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,56.25,3e-18,DUF3571,Protein of unknown function
DUF3571,CUFF.36217.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39210.1 | Symbols: CRR7 | chlororespiratory reduction 7 | ch...   144   2e-35

>AT5G39210.1 | Symbols: CRR7 | chlororespiratory reduction 7 |
           chr5:15703231-15703999 FORWARD LENGTH=156
          Length = 156

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 101/156 (64%), Gaps = 5/156 (3%)

Query: 1   MVGVLQAQAFNVGARYFPYAESYPIQSPVMHVTSPGLVKCFSSLIRQRLPQIAGV----- 55
           M   LQ Q FN G + F    +  +    +HVT    V   +   +     I+ +     
Sbjct: 1   MECSLQKQLFNNGDKLFSSRHNRRVSIEQVHVTDSLSVNSINLFHKPICYPISSIITSRK 60

Query: 56  SKSNTKLFALRRRRANERTETYVLLEPGEDEKFVSEEELKATLKERLTNWPGKALPPDLA 115
           SKS+  + A RRRR +  ++TYVLLE G+DE+FV+E+ELKA L+  L NWP  +LPPDLA
Sbjct: 61  SKSHFSVCATRRRRVHSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWPVNSLPPDLA 120

Query: 116 RYETIDEAVSFLVRSVCELEIDGDVGSVQWYEVRLE 151
           R++ +DEAV FLV++VCELEIDG+VGSVQWY+VRLE
Sbjct: 121 RFDDLDEAVDFLVKAVCELEIDGEVGSVQWYQVRLE 156