Miyakogusa Predicted Gene

Lj2g3v1079650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1079650.1 tr|B9H443|B9H443_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_759466 PE=4 SV=1,50.47,3e-18,
,CUFF.36215.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02120.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    67   4e-12

>AT3G02120.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr3:377122-377577 FORWARD LENGTH=126
          Length = 126

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 40  STDE-LRKSLIPDPLRVPKAFKFPERYTSPTDSIMSPVTKGLLARGKKGVAKL-PPGKYH 97
           ST+E ++K   P+ LRVP AFK+PERY SPTD++MSPVTKGLLAR +K    L PP    
Sbjct: 49  STNEPMKKIGTPERLRVPIAFKYPERYRSPTDAMMSPVTKGLLARTRKSSGSLIPPSFNQ 108

Query: 98  PKIPDMSLQEVG 109
            KI ++   E G
Sbjct: 109 TKIQELRKPESG 120