Miyakogusa Predicted Gene

Lj2g3v1069400.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1069400.2 Non Chatacterized Hit- tr|I0YN72|I0YN72_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,28.97,0.00000000003,seg,NULL,CUFF.36184.2
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29280.1 | Symbols:  | unknown protein; Has 24 Blast hits to ...   249   5e-67

>AT3G29280.1 | Symbols:  | unknown protein; Has 24 Blast hits to 24
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:11236705-11237947 REVERSE LENGTH=178
          Length = 178

 Score =  249 bits (637), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 131/149 (87%)

Query: 19  VASIALLPSGSVSGHFIQLPHSTCYGLHGTELACERECSRGEDYRLIKLTITDFNSQKER 78
           VASIALLP G++SGHFIQ+P S CYGLHGTELACE ECSRGEDYRLIKLTI D+N +KE+
Sbjct: 25  VASIALLPCGTISGHFIQMPSSICYGLHGTELACETECSRGEDYRLIKLTIIDYNRKKEQ 84

Query: 79  ATVVECKGHDAARFNSIDHAHGWDKDITALIEQKDGKKRILVSFECETLKADKAAEDHIR 138
             VVECKGHDAAR N ++HAHGW++D+  L+E+K GKK++ VSFECETLKAD+AAEDHIR
Sbjct: 85  TVVVECKGHDAARINDVEHAHGWEEDVIGLVEEKHGKKKVSVSFECETLKADEAAEDHIR 144

Query: 139 QFMPKLAGLDAIVNIGRMTISGLDFGAAE 167
           QFMPKLAGLDA++NIG M ISGLDF A E
Sbjct: 145 QFMPKLAGLDAVINIGPMKISGLDFAAVE 173