Miyakogusa Predicted Gene

Lj2g3v1069240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1069240.1 Non Chatacterized Hit- tr|D5LXF4|D5LXF4_OLEEU
Putative ubiquitin-protein ligase/zinc ion binding
(Fr,72.22,0.000007,no description,Zinc finger, RING/FYVE/PHD-type;
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN,,CUFF.36173.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29270.2 | Symbols:  | RING/U-box superfamily protein | chr3:...   319   1e-87
AT3G29270.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   319   1e-87
AT1G69330.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   276   8e-75
AT1G74370.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   233   8e-62
AT1G21650.3 | Symbols: SECA2 | Preprotein translocase SecA famil...    54   2e-07
AT1G21651.1 | Symbols:  | zinc ion binding | chr1:7601061-760415...    52   5e-07

>AT3G29270.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:11235326-11236117 FORWARD LENGTH=263
          Length = 263

 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/267 (59%), Positives = 188/267 (70%), Gaps = 13/267 (4%)

Query: 1   MWNFASNCIAGNVELKNDSSKLTHSGSECSDDETSVVG-REEGLECPVCWESFNIVENVP 59
           MWN AS+ + GN+  KND  +  H+ +ECSDD+ S VG ++EGLECP+CWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 60  YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 119
           YVLWCGHT+CKNCILGLQWA+VK PT PVQLPLFISCPWCNLLSFRLV+RG L+FP KNY
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 120 FLLWMVESMNGDRVKSHSTFCGDNQQNWPIKDNSTTGSQVYNGSLRRGQVRQPETHNSIQ 179
           F+LWMVE MNG+R  S      D   +       T    ++N    R    QPE   S+ 
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTDGNND---HTRETPSPCLHN----RHHRSQPEPSRSVN 181

Query: 180 YHGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPXXXXXXXXXXYAIPASAVILALYILIT 239
            H      +    +  SLRKSL+FFVQLTAKFP          YAIP SA ILA+YIL+T
Sbjct: 182 DH-----RIPRDNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVT 236

Query: 240 ILFALPSFLILYFSYPSLDWLVREIIT 266
           +L ALPSFLILYF+YP LDWLVREI+T
Sbjct: 237 LLLALPSFLILYFAYPCLDWLVREIVT 263


>AT3G29270.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:11235326-11236117 FORWARD LENGTH=263
          Length = 263

 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/267 (59%), Positives = 188/267 (70%), Gaps = 13/267 (4%)

Query: 1   MWNFASNCIAGNVELKNDSSKLTHSGSECSDDETSVVG-REEGLECPVCWESFNIVENVP 59
           MWN AS+ + GN+  KND  +  H+ +ECSDD+ S VG ++EGLECP+CWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 60  YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 119
           YVLWCGHT+CKNCILGLQWA+VK PT PVQLPLFISCPWCNLLSFRLV+RG L+FP KNY
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 120 FLLWMVESMNGDRVKSHSTFCGDNQQNWPIKDNSTTGSQVYNGSLRRGQVRQPETHNSIQ 179
           F+LWMVE MNG+R  S      D   +       T    ++N    R    QPE   S+ 
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTDGNND---HTRETPSPCLHN----RHHRSQPEPSRSVN 181

Query: 180 YHGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPXXXXXXXXXXYAIPASAVILALYILIT 239
            H      +    +  SLRKSL+FFVQLTAKFP          YAIP SA ILA+YIL+T
Sbjct: 182 DH-----RIPRDNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVT 236

Query: 240 ILFALPSFLILYFSYPSLDWLVREIIT 266
           +L ALPSFLILYF+YP LDWLVREI+T
Sbjct: 237 LLLALPSFLILYFAYPCLDWLVREIVT 263


>AT1G69330.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:26064138-26064950 REVERSE LENGTH=270
          Length = 270

 Score =  276 bits (707), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 140/273 (51%), Positives = 183/273 (67%), Gaps = 11/273 (4%)

Query: 1   MWNFASNCIAGNVELKNDSSKLTHSGSECSDDETSVVGR-EEGLECPVCWESFNIVENVP 59
           MW FASN I G++ LK        + S+CSDDE S + R EEGLECP+CWESFNIVENVP
Sbjct: 1   MWGFASNVI-GSMGLKKSPKDSAQASSQCSDDEVSNISRDEEGLECPICWESFNIVENVP 59

Query: 60  YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 119
           YVLWCGHTLC+NC+ GLQ AV++  +  +++P F+SCPWC LLSFR+VY+GNLKFPRKN+
Sbjct: 60  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 119

Query: 120 FLLWMVESMNGDRVK-----SHSTFCGDNQQNWPIKDNSTT-GSQVYNGSLRRGQVRQPE 173
           FLLWMVES+NGDR       SH +   DNQQ+ P    S + G+   N +L    + + +
Sbjct: 120 FLLWMVESLNGDRTSHGDRTSHGSLVTDNQQSAPTPRCSMSLGNHSSNNNLVARPLLRNQ 179

Query: 174 THNSIQYHGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPXXXXXXXXXXYAIPASAVILA 233
           + + + +H H+       R   S  KSL FF+  T+KFP          +AIP S +ILA
Sbjct: 180 STDLLPHHDHSNQ---PSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIILA 236

Query: 234 LYILITILFALPSFLILYFSYPSLDWLVREIIT 266
           LY L+TILFA+P+ L+LYF+YP L+ LV EI +
Sbjct: 237 LYFLLTILFAVPAGLVLYFAYPILERLVNEITS 269


>AT1G74370.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:27958200-27958985 REVERSE LENGTH=261
          Length = 261

 Score =  233 bits (595), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 159/268 (59%), Gaps = 9/268 (3%)

Query: 1   MWNFASNCI-AGNVELKNDSSKLTHSGSECSDDETSVVGREEGLECPVCWESFNIVENVP 59
           MWN AS  I  G +    +++      +     +     +EE LECP+CWESFN+VENVP
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDGRKTTKEEKLECPICWESFNVVENVP 60

Query: 60  YVLWCGHTLCKNCILGLQWA-VVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKN 118
           YVLWCGHT+CK C+LGLQ A V+K   LP QLP F++CPWCN+LS RLV  G ++FP KN
Sbjct: 61  YVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPSKN 120

Query: 119 YFLLWMVESMNGDRVKSHSTFCGDNQQNWPIKDNSTTGSQVYNGSLRRGQVRQPETHNSI 178
           ++LLWMVESMNG R ++ S    DN++   +           +G        +    N  
Sbjct: 121 FYLLWMVESMNGSRSEAPS----DNKR---VASGQRDLRNRCDGVSNTALGDEGLLDNRS 173

Query: 179 QYHGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPXXXXXXXXXXYAIPASAVILALYILI 238
            ++G T  +    RLH S+RKS+     L AKFP          YAIP SA +L +Y  +
Sbjct: 174 WWNGVTRGFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFV 233

Query: 239 TILFALPSFLILYFSYPSLDWLVREIIT 266
           T   A+PSFL+LYF++PSL+WL+REI T
Sbjct: 234 TFALAVPSFLVLYFAFPSLNWLIREIAT 261


>AT1G21650.3 | Symbols: SECA2 | Preprotein translocase SecA family
           protein | chr1:7592891-7604152 REVERSE LENGTH=1805
          Length = 1805

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 19/72 (26%)

Query: 44  ECPVCWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 103
           ECPVC +S++    VP VL CGHT C+ C+            LP + P  I CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL- 53

Query: 104 FRLVYRGNLKFP 115
                   +KFP
Sbjct: 54  --------VKFP 57


>AT1G21651.1 | Symbols:  | zinc ion binding | chr1:7601061-7604152
           REVERSE LENGTH=811
          Length = 811

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 44  ECPVCWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 103
           ECPVC +S++    VP VL CGHT C+ C+            LP + P  I CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL- 53

Query: 104 FRLVYRGNLKFPRKNYFLLWMVESMNGDRVKSHSTF 139
            +   +G    P KN  LL +  S++  +++    F
Sbjct: 54  VKFPPQGPSALP-KNIDLLRLFPSISKLKLEPGRNF 88