Miyakogusa Predicted Gene

Lj2g3v1069200.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1069200.3 Non Chatacterized Hit- tr|H9GCF3|H9GCF3_ANOCA
Uncharacterized protein OS=Anolis carolinensis
GN=UBE4,54.55,2e-19,Modified RING finger domain,U box domain; U-box,U
box domain; UBIQUITINATION FACTOR E4B/UFD2(YEAST),,CUFF.36534.3
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15400.1 | Symbols:  | U-box domain-containing protein | chr5...   456   e-129

>AT5G15400.1 | Symbols:  | U-box domain-containing protein |
            chr5:4997764-5002907 REVERSE LENGTH=1038
          Length = 1038

 Score =  456 bits (1174), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/277 (80%), Positives = 249/277 (89%), Gaps = 3/277 (1%)

Query: 1    MSNTAEWERRPVQERQERTRLFHSQEIIIRIDMKLANEEVSMLAFTSEQITVPFLLPEMV 60
            MSNTAEWE+RP QERQERTRLFHSQE I+RIDMKLANE+V+MLAFTSE+IT PFLLPEMV
Sbjct: 765  MSNTAEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMV 824

Query: 61   ERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKDLLKQIVHIYIHLARGDTNAIFPAA 120
            ERVA+MLNYFLLQLVGPQRKSLSLKDPEKYEFRPK LLKQIV IY++LARGDT  IFP A
Sbjct: 825  ERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGA 884

Query: 121  ISKDGRSYNDQLFSAGADVLRRIGEDPKVIQEFIQLGAKAKVAASEAMDAEATLGEIPDE 180
            IS DGRSYN+QLF+AGADVLRRIGE+ ++IQEF++LG KAK AASEA+DAEA LGEIPDE
Sbjct: 885  ISSDGRSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDE 944

Query: 181  FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDASDPFNRSHLTADMLIPDVELKARI 240
            FLDPIQYTLM+DPVILPSSRITVDRP+IQRHLLSD  DPFNR+HLT+DMLIPD+ELKA+I
Sbjct: 945  FLDPIQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKI 1004

Query: 241  EEFVRSQEMKKHGEGLSIQSSSKATIQTTNGEKMLID 277
            +EFV+S + KK   G    SS+K  IQTTN + MLID
Sbjct: 1005 DEFVKSHQSKKRTSGE--DSSNKERIQTTNSD-MLID 1038