Miyakogusa Predicted Gene
- Lj2g3v1069050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1069050.1 Non Chatacterized Hit- tr|I1JDI6|I1JDI6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8095
PE=,78.04,0,RNA-binding domain, RBD,NULL; seg,NULL; RNA-DEPENDENT RNA
POLYMERASE,RNA-dependent RNA polymerase, e,CUFF.36192.1
(1100 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymer... 1417 0.0
AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase... 769 0.0
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA poly... 530 e-150
AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family pr... 113 1e-24
AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family pr... 105 1e-22
AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family pr... 102 2e-21
>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1
| chr1:5094317-5097817 REVERSE LENGTH=1107
Length = 1107
Score = 1417 bits (3667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/1106 (63%), Positives = 854/1106 (77%), Gaps = 15/1106 (1%)
Query: 1 MRKTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSA 60
M KTI+++GFP V+ V+ F+E TG TVYAIKVR K PR +AI+QFTS +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 DMMSRA-NSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTV 119
+++ A L+YG SYLK E+E+DIVPKPR LH+++ +K+ FGCQ+S +F LW+
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 120 NVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIY 179
+V V+FG GMRK HF S Y+LELSYENIW+++LH P+G +K L+IQ++GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180
Query: 180 KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRE 239
+ + ++ M++ D DEQWIR DFT S IGQS+A CLELP VP+FRE
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 240 NFA-YYEESARRCTVETGLPFSLNLR-LVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGP 297
NFA Y E A +E+G +S N LVP+V PP G +P++ILFK+N+LVQ+ CL+GP
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 298
Query: 298 SLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTI 357
+LD DFY L++ + D I++ LEKL+H + CYEP WL ++Y ++S + P SPTI
Sbjct: 299 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 358
Query: 358 SLDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTD 417
SLD GLVY+ R QVTP +VYF GPE+NVSNRVLRH+ ++I+NFLRVSFVDE+L+K+ S D
Sbjct: 359 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 418
Query: 418 LSSRTDRQK-TEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAA 476
LS R+ Q+ T++Y+RI S+LR+GIVIGDKKFEFLAFSSSQLRENS WMFAP TAA
Sbjct: 419 LSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDR-ITAA 477
Query: 477 YIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDG 536
+IR WMGDF IRNVAKYAARLGQSF SS ETL+V DE+E+IPDV++ T YVFSDG
Sbjct: 478 HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 537
Query: 537 IGKISHEFARSVARKCGHNS-TPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDN 595
IGKIS EFAR VARKCG +PSAFQIRYGGYKGVVAVDP S KLSLRKSM K++S+N
Sbjct: 538 IGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 597
Query: 596 TKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALD 655
TKLDVLA SK+QPCY+NRQLITLLSTLGV D+VFEKKQR+ V++LD +LT L+A EAL
Sbjct: 598 TKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALG 657
Query: 656 LMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCL 715
LM+ GE TNILK +++CGYKP+ EPFLSMM+Q FRASKLLELRTKTRIFI GR+MMGCL
Sbjct: 658 LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 717
Query: 716 DETGTLEYGQVFVQFSNN-RLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHM 774
DET TLEYGQV VQ+S+ R G + ++ITG VVVAKNPCLHPGDVRVL+A+NVPAL+HM
Sbjct: 718 DETRTLEYGQVVVQYSDPMRPGRR--FIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHM 775
Query: 775 VDCVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVM 834
VDCVVFP+KG RPHPNECSGSDLDGDIYFVCWD +L+P RT +PMDYT P LDHDV
Sbjct: 776 VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 835
Query: 835 IEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPA 894
IEEVEEYF NYIVND LGIIANAHT FAD+EPLKA ++PCI+L++ FS AVDFPKTGV A
Sbjct: 836 IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 895
Query: 895 VIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDP 954
VIPQ LY KEYPDFMEKPDKPTY S NVIGKLFREV+ + SI SFT +VA KS+D
Sbjct: 896 VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 955
Query: 955 DMEVDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEA 1014
DMEVDGF +YVD+A+Y K NYD++LGNLMDYYGIKTEAEILSG IM+MSKSFTKRRDAE+
Sbjct: 956 DMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAES 1015
Query: 1015 ITMAVRSLRKEARTWFNXXXXXXXXXXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFP 1074
I AVR+LRKE + FN WY+VTYH SYWG Y+EG+NRDH+LSF
Sbjct: 1016 IGRAVRALRKETLSLFN--ASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFA 1073
Query: 1075 WCVYSLLVQIKKEKIAWNRRNADQSL 1100
WCVY LV+IKK + RR ++L
Sbjct: 1074 WCVYDKLVRIKKTNLG--RRQRQETL 1097
>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 |
chr4:6780522-6784390 FORWARD LENGTH=1133
Length = 1133
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/1123 (39%), Positives = 658/1123 (58%), Gaps = 52/1123 (4%)
Query: 2 RKTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGR-VPRAFAIIQFTSVE--S 58
R T+++ P + + F+E + G+ TV+A+++ + PR FA +QFT++E S
Sbjct: 9 RSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKS 68
Query: 59 SADMMSRANSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGC-QISKGRFSALWN 117
A ++S + L + L++ E DI+P+P L+++ L+ G + + RF AL
Sbjct: 69 RAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEK 128
Query: 118 TVNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHL---LIQLLG 174
V + R+ F + ++ YK+E+ +E+I + L G A + L++L
Sbjct: 129 WDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIET-LSCCVNGDASEIDAFLLKLKY 187
Query: 175 APRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCV 234
P+++K ++ +C + D WIR DF+ IG S+ CLE+ +G +
Sbjct: 188 GPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 247
Query: 235 PNFRENFAYYEESARRCTVETGLPFSLNLRLVPIV-APPQGIEIPYDILFKVNSLVQHGC 293
+ YY E T G F+ ++VP++ A G+E PY+ILF++N+LV
Sbjct: 248 LDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQK 307
Query: 294 LAGPSLDNDFYHLVDPCR-MDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSS-KRP 351
++ + + L+ R M L+ L+KL+ CY+P ++ Q + + K
Sbjct: 308 ISLFAASD--MELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHS 365
Query: 352 PRSPTISL-DTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEEL 410
P S L + ++ +RA VTP K+Y GPE+ +N V+++F EH+ +F+RV+FV+E+
Sbjct: 366 PASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDW 425
Query: 411 DKLYSTDLSSRTDR------QKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLW 464
KL + LS + +T IY R+LSIL GI +G K+FEFLAFS+SQLR NS+W
Sbjct: 426 SKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485
Query: 465 MFAPTTTGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKV 524
MFA + A IREWMG FR+IR+++K AAR+GQ F +S +TL V +VE IPD++V
Sbjct: 486 MFA-SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEV 544
Query: 525 NDGRTEYVFSDGIGKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSL 584
+Y FSDGIGKIS FA+ VA+KCG + PSAFQIRYGGYKGV+AVD +S KLSL
Sbjct: 545 TTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSL 604
Query: 585 RKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTML 644
R SM K+DS+N L+V ++ PC+LNR++I LLSTLG+ D +FE Q ++ L ML
Sbjct: 605 RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNML 664
Query: 645 TDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIF 704
D A L +S N+L +ML+ GY P+ EP+LSMM++ S+L EL+++ RI
Sbjct: 665 EDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRIL 724
Query: 705 IPSGRAMMGCLDETGTLEYGQVFVQFSNNRLG----NQSLY--------VITGKVVVAKN 752
+P GR ++GC+DE G LEYGQV+V+ + + +QS + V+ GKVVV KN
Sbjct: 725 VPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKN 784
Query: 753 PCLHPGDVRVLKAMNVPALHHM--VDCVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDL 810
PCLHPGD+RVL A+ +DC++FP+KG RPHPNECSG DLDGD +FV WD +
Sbjct: 785 PCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKI 844
Query: 811 IPSRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAM 870
IPS + PMDY + +DHDV +EE+ ++F +Y+++D LG+I+ AH V ADR+P KA
Sbjct: 845 IPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKAR 904
Query: 871 AEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREV 930
++ C++L+ L S AVDF KTG PA +P L +E+PDF+E+ +KPTY+S +V GKL+R V
Sbjct: 905 SQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAV 964
Query: 931 QGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKT 990
+ SS A E + ++D +E GF +++ A H+ Y +L +LM YYG
Sbjct: 965 K--SSLAQRKPEAESEDTV-AYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAAN 1021
Query: 991 EAEILSGNIMKMSKSFTKRRD------AEAITMAVRSLRKEARTWFNXXXXXXXXXXXXX 1044
E EIL+G I+K + + R + + IT++V+ L KEA WF
Sbjct: 1022 EEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFE-KSCEDEQQKKKL 1079
Query: 1045 XXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKE 1087
WYYVTY+ ++ DE + +LSFPW V +L+ IK E
Sbjct: 1080 ASAWYYVTYNPNH---RDEKLT---FLSFPWIVGDVLLDIKAE 1116
>AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA
polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196
Length = 1196
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 386/1121 (34%), Positives = 562/1121 (50%), Gaps = 107/1121 (9%)
Query: 45 PRAFAIIQFTSVESSADMMSRANSLWYGNSYLKVREMERDIVPKP---------RTFLHS 95
P AF + F ES+ M A N L + ++ + PK T +
Sbjct: 77 PHAF--VHFAVFESAGRAMDAAGQC---NLILDGQPLKVSLGPKNPYSLNQRRRTTVPYK 131
Query: 96 LNNVKLSFGCQISKGRFSALWNTVNVE--VNFGSGMRKWHFILSDN------------NV 141
L + L G +S+ F W V+ V+ K+ F S N
Sbjct: 132 LAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINC 191
Query: 142 RYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYKLNNPTSGNVYED-PSMNYCMD 200
YKLEL +I + ++ G L++QL +PR++ ++Y+ P D
Sbjct: 192 DYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVW--YRTADDDIYDTVPGDLLDDD 247
Query: 201 TPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRCTVETGLPFS 260
P WIR DFT IG+ + + L + R Y+ R E + +
Sbjct: 248 DP---WIRTTDFTQVGAIGRCHSYRV-LISPRYENKLRTALDYFR---MRRVQEERVRWP 300
Query: 261 LNLRLVPIVAPPQGIE---------IPYDILFKVNSLVQHGCLAGPSLDNDFYHLVDPCR 311
+R P P I ++I+F VNS++ G L F+ L+
Sbjct: 301 PRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQP 360
Query: 312 MDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISLDTGLVYIRRAQV 371
D+ +L+ L K ++ K L + + K P + + IRR +
Sbjct: 361 KDVNIA--SLKHLCTYKRPVFDAYKRL--KLVQEWIQKNPKLLGSHEQSEDISEIRRLVI 416
Query: 372 TPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYST-----------DLSS 420
TP + Y PE+ +SNRVLR ++ + FLRV+F+DE + + S DL+S
Sbjct: 417 TPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTS 476
Query: 421 RTDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIRE 480
+ QKT +++R+ SIL +G + +K+ FLAFS++QLR+ S W FA + I+
Sbjct: 477 SSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGK-TRVSDIKT 535
Query: 481 WMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEI-IPDVKVNDGRTEYVFSDGIGK 539
WMG F+ +NVAK AAR+G F S+ T+ V EV+ +PD++ R YVFSDGIG
Sbjct: 536 WMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGT 590
Query: 540 ISHEFARSVARKCGHNS--TPSAFQIRYGGYKGVVAVDPTSR--AKLSLRKSMHKYDSDN 595
I+ + A V K + +P A+QIRY G+KGVVA P+ +L+LR SM K+ S +
Sbjct: 591 ITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKH 650
Query: 596 TKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALD 655
T L++ + ++FQP +LNRQ+ITLLS LGV D +F Q + +L+ +L D+ A E L
Sbjct: 651 TILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL- 709
Query: 656 LMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCL 715
S E N ML G+KP EP L M+ + R ++L LR K+RIF+ SGR +MGCL
Sbjct: 710 TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCL 769
Query: 716 DETGTLEYGQVFVQFSNNRLGN-------------QSLYVITGKVVVAKNPCLHPGDVRV 762
DE G LE+GQ F+Q S + N L V+ G V +AKNPCLHPGDVR+
Sbjct: 770 DEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRI 829
Query: 763 LKAMNVPALHHMVDCVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLI-PSRTEQP-MD 820
L+A++VP LHHM DC++FP+KG RPH NE SGSDLDGD+YFV WD LI P+R P M
Sbjct: 830 LEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMH 889
Query: 821 YTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQL 880
Y AA L V +++ ++F + N+ LG I NAH V ADR AM E C+ L++L
Sbjct: 890 YDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAEL 949
Query: 881 FSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGI-SSSAGS 939
+ AVDFPKTG +P L K YPDFM K D TY S ++G+L+R V+ + A +
Sbjct: 950 AATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEA 1009
Query: 940 ITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNI 999
+ + + + +D +E+ GF D + +A+ HK YD +L L+ Y ++ E EI++G+I
Sbjct: 1010 SSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHI 1069
Query: 1000 MKMSKSFTKRRD--AEAITMAVRSLRKEARTWF--------NXXXXXXXXXXXXXXXXWY 1049
M K +K++ E + + SL+KE R F N WY
Sbjct: 1070 WSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWY 1129
Query: 1050 YVTYHHSYWGCYDEGMNRDH-----YLSFPWCVYSLLVQIK 1085
+VTYH + E + D LSF W L +IK
Sbjct: 1130 HVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
>AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8607533-8612441 REVERSE LENGTH=977
Length = 977
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 158/684 (23%), Positives = 273/684 (39%), Gaps = 136/684 (19%)
Query: 360 DTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHI------DNFLRVSFVD-EELDK 412
D+G + + V P Y + +L H H+ DN L V F D ++
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSSS 257
Query: 413 LYSTDLSSRTDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQ--------------- 457
YS D Y I +NGI+IG ++++F F
Sbjct: 258 TYSIDH-----------YFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKC 306
Query: 458 --LRENSLWMFAPTT----TGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSV 511
+R +S + TG + R R +A Y AR S T+TL V
Sbjct: 307 YFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLIL-SKTKTLEV 365
Query: 512 SRDEVEI--IPDVKVND---------GRTEYVFSDGIGKISHEFAR-------------- 546
+ I D+ +D + + SDG G IS + AR
Sbjct: 366 DMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRS 425
Query: 547 -SVARKCGHNSTPSAFQIR--YGGY--KG-----------VVAVDPTSRAKLSLRKSMHK 590
S+ C + P Q R Y GY KG V V P S K+S S+
Sbjct: 426 ESIQEAC-YQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRP-SMIKVSKDPSLSN 483
Query: 591 YDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKA 650
+ + N V + + L++ L+ LLS G+ + F + + + ++ + A
Sbjct: 484 FSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAA 543
Query: 651 QEALDLMSSGEITNI-LKEMLICGY---KPNVEPFLSMMMQT----FRASKLLELRTKTR 702
A ++ GE+ + +M++ G +P+++ +LS++++T +A KL
Sbjct: 544 LNA--ALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLP------- 594
Query: 703 IFIPSGRAMMGCLDETGTLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRV 762
+ +MG +D TG L+ +V V + + I+G+V+V +NP LH GD+ +
Sbjct: 595 --VTESYYLMGTVDPTGALKEDEVCVILESGQ--------ISGEVLVYRNPGLHFGDIHI 644
Query: 763 LKAMNVPALHHMVD----CVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPS-RTEQ 817
LKA V AL V V FP+KG R +E +G D DGD+YF+ + +L+ + + +
Sbjct: 645 LKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSE 704
Query: 818 PMDYTAAPN----------MELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADR--- 864
P P+ + + + ++ +GI A++ DR
Sbjct: 705 PWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLI 764
Query: 865 ------EPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYV 918
E M + ++L ++ A+D PK G +P +L +P +ME+ K +
Sbjct: 765 LGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQ 822
Query: 919 SPNVIGKLFREVQGISSSAGSITS 942
S +++G +F V+ ++ S +S
Sbjct: 823 STSILGLIFDFVKSQTTEEPSPSS 846
>AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8602222-8606887 REVERSE LENGTH=927
Length = 927
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 146/591 (24%), Positives = 243/591 (41%), Gaps = 114/591 (19%)
Query: 430 YERILSILRNGIVIGDKKFEFLAFS----SSQLRENSLWMFAP--TTTGCTAAY------ 477
Y + I +NGI++G ++++F F + + + NS TG TA+
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327
Query: 478 ------IREWMGDFRRIRNV---AKYAARLGQSFGSSTETLSVSRDEVEI--IPDVKVND 526
I E F + + A Y AR S T+ L V E+ + I D+ +D
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHD 386
Query: 527 GRTEYVF---------SDGIGKISHEFAR---------------SVARKCGHNSTPSAFQ 562
V SDG G IS + AR ++ C P Q
Sbjct: 387 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEP-PLLIQ 445
Query: 563 IRY----GGYKGV-----------VAVDPTSRAKLSLRKSMHKYDSDNTKLDVLACSKFQ 607
IR KG+ V V P S K+ K++ + + N+ V + +
Sbjct: 446 IRMFNDGSAVKGIFLLNKNLPPQTVQVRP-SMIKVYKDKNLSNFSTFNSLEVVTTSNPPK 504
Query: 608 PCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSSGEITNILK 667
L++ L+ LLS GV ++ F + + + T+ A +A + + N L
Sbjct: 505 RAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL- 563
Query: 668 EMLICGYKPNVEPFLSMMMQTFRASKLLELRTKT----RIFIPSGRAMMGCLDETGTLEY 723
+M++ G P EP+L + SKLL+L ++ I +MG +D TG L+
Sbjct: 564 QMIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKE 617
Query: 724 GQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVD----CVV 779
+V S + V+V +NP LH GD+ +LKA V +L V V
Sbjct: 618 DEV------------SGLAKSQDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVF 665
Query: 780 FPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIP---------SRTEQPMDYTAAPNMELD 830
FP+KG R +E +G D DGD+YF+ + L+ S + + YT EL
Sbjct: 666 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELS 725
Query: 831 HDVMIEEVEEYF--TNYIVNDCLGIIANAHTVFADR---------EPLKAMAEPCIKLSQ 879
+ + EE+ + F T + + +G A++ DR + M + +KL+
Sbjct: 726 PEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTD 785
Query: 880 LFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREV 930
++ A+D PKTG +P ++ +P +ME+ T+ S +++G +F V
Sbjct: 786 IYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER--NKTFKSTSILGLIFDTV 834
>AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8595820-8600757 REVERSE LENGTH=992
Length = 992
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 163/707 (23%), Positives = 271/707 (38%), Gaps = 151/707 (21%)
Query: 332 YEPTKW--LTEQYITYLSSKRPPRSPTISLDTGLVYIRRAQVTPCKVYFCGPEINVSNRV 389
YE W L ++Y + +RP + D+G+ + + V Y + +
Sbjct: 184 YEAAVWNRLGQRYCSPKERRRP-----LEGDSGMTHYYQCHVATDGSYKFKGHLLENTGT 238
Query: 390 LRHFREHIDNFLRVSFVDEELDKLYSTDLSSRTDRQKTEIYERILSILRNGIVIGDKKFE 449
H DN L V F DK+ + ++Y I +NGI++G +++
Sbjct: 239 HLHKVLGDDNVLTVKF-----DKVLGVETYC------NDLYSTYKGIAKNGIMVGLRRYR 287
Query: 450 FLAF-------------------------SSSQLRENSLWMFAPTTTGCTAAYIREWMGD 484
F F S++ + + ++FA G + R
Sbjct: 288 FFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFA----GKSMHEARMHFMH 343
Query: 485 FRRIRNVAKYAARLGQSFGSSTETLSVSRDEV--EIIPDVKVNDGRTEYVF--------- 533
+ ++ Y +R S T+TL V + E I D+ +D + V
Sbjct: 344 VNTLSSLPNYMSRFSLIL-SKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIH 402
Query: 534 SDGIGKISHEFAR---------------SVARK---------CGHNSTPSAFQIR--YGG 567
SDG G IS + AR ++ K CG P Q R Y G
Sbjct: 403 SDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEP-PLLIQFRIFYNG 461
Query: 568 Y--KGVVAVDPTSRAK-LSLRKSMHKYDSDNT--------KLDVLACSKF-QPCYLNRQL 615
Y KG + + + +R SM K D T L+V+ S + L+R L
Sbjct: 462 YAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNL 521
Query: 616 ITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSSGEITNILKEMLICGYK 675
+ LLS GV ++ F R+ + + T+ A +A + T +M++ G
Sbjct: 522 VALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT---ADMILVGI- 577
Query: 676 PNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDETGTLEYGQVFVQFSNNRL 735
P EP+L + ++ L+ R I +MG +D TG L+ ++ V + +
Sbjct: 578 PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVILHSGQ- 635
Query: 736 GNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVD----CVVFPKKGSRPHPNE 791
I+G V+V +NP LH GD+ VLKA V AL V V FP+KG R +E
Sbjct: 636 -------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDE 688
Query: 792 CSGSDLDGDIYFVC--------------WDSDLIPSRT---EQPMDYTAAPNMELDHDVM 834
+G D DGD+YF+ W S PS+ +P + + E +
Sbjct: 689 IAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMF 748
Query: 835 IEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPC-----------IKLSQLFSI 883
++ + D +G+ A+ D P + + +KL ++
Sbjct: 749 LK------ARFCKRDVIGMAADCWLGIMD--PFLTLGDESAKEKYERKKNILKLIDIYYD 800
Query: 884 AVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREV 930
A+D PK G +P +L K +P +ME+ K + S +++G +F V
Sbjct: 801 ALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847