Miyakogusa Predicted Gene

Lj2g3v1068710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1068710.1 Non Chatacterized Hit- tr|F6Z6E4|F6Z6E4_CIOIN
Uncharacterized protein OS=Ciona intestinalis
GN=Cin.3,32.12,2e-18,t-snare proteins,t-SNARE; SNARE PROTEIN,
PUTATIVE,NULL; VESICLE TRANSPORT V-SNARE PROTEIN
VTI1-RELAT,CUFF.36190.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39510.1 | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A...   277   3e-75
AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport...   248   1e-66
AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snar...   201   2e-52
AT3G29100.2 | Symbols: VTI13 | vesicle transport V-snare 13 | ch...   197   4e-51
AT5G39630.1 | Symbols:  | Vesicle transport v-SNARE family prote...   159   1e-39

>AT5G39510.1 | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A,
           ZIG1 | Vesicle transport v-SNARE family protein |
           chr5:15822035-15823591 FORWARD LENGTH=221
          Length = 221

 Score =  277 bits (708), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 158/175 (90%)

Query: 1   MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 60
           MS+VF+GYERQYCELSA+LSKKC++A SL+GEQKKQK+SEIK+G++ AE LIRKMDLEAR
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60

Query: 61  SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 120
           +L PN+++ LL KLRE+KSDLNN K+EVK+I SG LN +ARDELLE+GMADT TAS+DQR
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120

Query: 121 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGV 175
           +RLMMST+RL +T DRV+ SR+TM+ETEE+GVSILQDLH QRQSLL AH TLHGV
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGV 175


>AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport
           v-SNARE family protein | chr1:9216103-9217793 FORWARD
           LENGTH=222
          Length = 222

 Score =  248 bits (633), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 147/176 (83%), Gaps = 1/176 (0%)

Query: 1   MSNVFEGYERQYCELSANLSKKCTAAGSL-NGEQKKQKVSEIKAGIDEAEALIRKMDLEA 59
           MS+VFEGYERQYCELS NLS+KC +A  L NGE+KK K++EIK+GIDEA+ LIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 60  RSLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQ 119
           RSLQP+ +AV L+KLREYKSDLN LK E K++ S +  PS+R+EL+ESGMAD    S+DQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 120 RSRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGV 175
           R RL MS +RL+++ DR+++SR+ MLETEE+G+SI+QDL  QRQ+LLHAH  LHGV
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGV 176


>AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snare
           13 | chr3:11075916-11076581 REVERSE LENGTH=195
          Length = 195

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 111/124 (89%)

Query: 52  IRKMDLEARSLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMAD 111
           ++KMDLEAR+L PNV++ LL KLREYKSDLNN K+EVK+I SGNLN +ARDELLE+GMAD
Sbjct: 26  VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85

Query: 112 TLTASSDQRSRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTT 171
           TLTAS+DQRSRLMMSTD L +T DR++ SR+T+LETEELGVSILQDLH QRQSLL AH T
Sbjct: 86  TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145

Query: 172 LHGV 175
           LHGV
Sbjct: 146 LHGV 149


>AT3G29100.2 | Symbols: VTI13 | vesicle transport V-snare 13 |
           chr3:11075916-11076497 REVERSE LENGTH=167
          Length = 167

 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 108/121 (89%)

Query: 55  MDLEARSLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLT 114
           MDLEAR+L PNV++ LL KLREYKSDLNN K+EVK+I SGNLN +ARDELLE+GMADTLT
Sbjct: 1   MDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLT 60

Query: 115 ASSDQRSRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHG 174
           AS+DQRSRLMMSTD L +T DR++ SR+T+LETEELGVSILQDLH QRQSLL AH TLHG
Sbjct: 61  ASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHG 120

Query: 175 V 175
           V
Sbjct: 121 V 121


>AT5G39630.1 | Symbols:  | Vesicle transport v-SNARE family protein
           | chr5:15868262-15869714 FORWARD LENGTH=207
          Length = 207

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 124/175 (70%), Gaps = 4/175 (2%)

Query: 1   MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 60
           MSNVF  Y++QY ELS NLSKKC+ A SL G +KK+K+SEI   ++ AE LI KMD  A 
Sbjct: 1   MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEKLSEITYDLENAEKLISKMDHAAS 60

Query: 61  SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 120
           +L PN++++LL KL+E KS L  L++E+K+  S NL  + R+E+LE+  AD     +DQR
Sbjct: 61  NLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQR 116

Query: 121 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGV 175
           SRLM ST+ L +T + ++ S++ +LETE +G+SIL++L  Q++SL ++   LH +
Sbjct: 117 SRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAMLHEI 171