Miyakogusa Predicted Gene

Lj2g3v1068660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1068660.1 Non Chatacterized Hit- tr|I3T8V3|I3T8V3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,60.92,3e-18,DUF1997,Protein of unknown function
DUF1997,gene.g40720.t1.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39530.1 | Symbols:  | Protein of unknown function (DUF1997) ...    76   7e-15
AT5G39520.1 | Symbols:  | Protein of unknown function (DUF1997) ...    67   5e-12

>AT5G39530.1 | Symbols:  | Protein of unknown function (DUF1997) |
           chr5:15826285-15827517 REVERSE LENGTH=239
          Length = 239

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 29/123 (23%)

Query: 21  YELPGEEWRIKMPPIQFLFWSFHPAADVR----------------------------WEL 52
           + L  EEWRI+M PI FLF +  P  D+R                            W+L
Sbjct: 87  HRLNEEEWRIQMLPINFLFLTVWPVVDMRLRCKSNGQDYPPDVPLDITKVLELNMMRWKL 146

Query: 53  QGLSNGIIDPDDFSLDFRSAIYPERMRKSSWLKNQTEMHISFSVTPAITLIPENIMQDAI 112
           QGL + +++P DFSL+ + A+YP+R  K + L+ Q EM+ISF + P + L+PE++ ++  
Sbjct: 147 QGL-DRVMEPADFSLEVKGALYPDRRGKHTRLRGQLEMNISFVLPPVLELVPEDVRRNLA 205

Query: 113 ELV 115
             V
Sbjct: 206 NAV 208


>AT5G39520.1 | Symbols:  | Protein of unknown function (DUF1997) |
           chr5:15823920-15825416 REVERSE LENGTH=230
          Length = 230

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 32/123 (26%)

Query: 21  YELPGEEWRIKMPPIQFLFWSFHPA---------------ADV-------------RWEL 52
           Y L  EEWRI+M PI+F F +  P                +DV             +WEL
Sbjct: 79  YRLNEEEWRIQMLPIKFFFLTACPVVVMRIRCKSNGQDYPSDVPLHITKVLELNMTKWEL 138

Query: 53  QGLSNGIIDPDDFSLDFRSAIYPERMRKSSWLKNQTEMHISFSVTPAITLIPENI---MQ 109
           QGL   +++P DF+L  + A+YP+R  + + LK + E  ISF +   + L+PE++   M 
Sbjct: 139 QGLDR-VMEPTDFTLGVKGALYPDRRGRHTRLKGRLETTISFVLPSVLALVPEDVRRNMA 197

Query: 110 DAI 112
           +AI
Sbjct: 198 NAI 200