Miyakogusa Predicted Gene
- Lj2g3v1058190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1058190.1 tr|B9VJS8|B9VJS8_LOTJA Starch synthase IIa
OS=Lotus japonicus PE=2 SV=1,100,0,STARCH SYNTHASE,NULL;
GLYCOSYLTRANSFERASE,NULL; glgA: glycogen/starch synthases, ADP-glucose
type,Gl,CUFF.36103.1
(301 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:624... 558 e-159
AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases, ADP-glu... 323 1e-88
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch syntha... 323 1e-88
AT1G32900.1 | Symbols: | UDP-Glycosyltransferase superfamily pr... 196 1e-50
AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | ch... 173 2e-43
AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 | chr1:395... 164 5e-41
AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-39... 164 6e-41
>AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 |
chr3:62456-65678 REVERSE LENGTH=792
Length = 792
Score = 558 bits (1438), Expect = e-159, Method: Compositional matrix adjust.
Identities = 253/301 (84%), Positives = 279/301 (92%)
Query: 1 MDLFKFYDPLGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLHGIINENDWKFR 60
+D FK YDP+GGEHFNIFAAGLK ADR++TVSHGY+WE+KT EGGWGLH IINENDWKFR
Sbjct: 492 LDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINENDWKFR 551
Query: 61 GIVNGIDSKDWNPQFDVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVREDVPLIGF 120
GIVNGID+++WNP+FD +L SD YTNY+LE LH GK QCKAALQKELGLPVR DVPLIGF
Sbjct: 552 GIVNGIDTQEWNPEFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLPVRPDVPLIGF 611
Query: 121 IGRLDHQKGVDLIAEAIPWMMDQDVQLIMLGTGRPDLEQMLRQFESQHRDKVRGWVGFSV 180
IGRLDHQKGVDLIAEA+PWMM QDVQL+MLGTGRPDLE++LRQ E Q+RDK RGWVGFSV
Sbjct: 612 IGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSV 671
Query: 181 KTAHRITAGVDILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQAFNPFEESGLG 240
KTAHRITAG DILLMPSRFEPCGLNQLYAMNYGT+PVVHAVGGLRDTVQ F+P+ E+GLG
Sbjct: 672 KTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQQFDPYSETGLG 731
Query: 241 WTFDSAEADKLIHALGNCLWTYREYKKSWEGLQKRGMSQDLSWDNAAQQYEEVLVAAKYQ 300
WTFDSAEA KLIHALGNCL TYREYK+SWEGLQ+RGM+QDLSWDNAA++YEEVLVAAKY
Sbjct: 732 WTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAKYH 791
Query: 301 W 301
W
Sbjct: 792 W 792
>AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases,
ADP-glucose type | chr5:8266934-8270860 FORWARD
LENGTH=652
Length = 652
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/294 (54%), Positives = 203/294 (69%), Gaps = 14/294 (4%)
Query: 12 GEHFNIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLHGIINENDWKFRGIVNGIDSKDW 71
GE N+ + T+DRI+TVS GYAWE+ T EGG+GL +++ GI NGI+ +W
Sbjct: 360 GEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINVDEW 419
Query: 72 NPQFDVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVREDVPLIGFIGRLDHQKGVD 131
NP D H+ +Y+ + + S K +CK ALQKELGLP+R + P+IGFIGRLD+QKG+D
Sbjct: 420 NPSTDEHIP----FHYSADDV-SEKIKCKMALQKELGLPIRPECPMIGFIGRLDYQKGID 474
Query: 132 LIAEAIPWMMDQDVQLIMLGTGRPDLEQMLRQFESQHRDKVRGWVGFSVKTAHRITAGVD 191
LI A P +M D+Q +MLG+G P E +R E +RDK RGWVGF+V +HRITAG D
Sbjct: 475 LIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCD 534
Query: 192 ILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQAFNPF----EESGLGWTFDSAE 247
ILLMPSRFEPCGLNQLYAM YGT+PVVH GGLRDTV+ FNP+ +G GW F
Sbjct: 535 ILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLS 594
Query: 248 ADKLIHALGNCLWTYREYKKSWEGLQKRGMSQDLSWDNAAQQYEEVLVAAKYQW 301
D ++ AL TYREYK+SWEGL +RGM+++ SW+NAA QYE+V +QW
Sbjct: 595 KDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQV-----FQW 643
>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch
synthases, ADP-glucose type | chr5:8266934-8270860
FORWARD LENGTH=652
Length = 652
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/294 (54%), Positives = 203/294 (69%), Gaps = 14/294 (4%)
Query: 12 GEHFNIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLHGIINENDWKFRGIVNGIDSKDW 71
GE N+ + T+DRI+TVS GYAWE+ T EGG+GL +++ GI NGI+ +W
Sbjct: 360 GEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINVDEW 419
Query: 72 NPQFDVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVREDVPLIGFIGRLDHQKGVD 131
NP D H+ +Y+ + + S K +CK ALQKELGLP+R + P+IGFIGRLD+QKG+D
Sbjct: 420 NPSTDEHIP----FHYSADDV-SEKIKCKMALQKELGLPIRPECPMIGFIGRLDYQKGID 474
Query: 132 LIAEAIPWMMDQDVQLIMLGTGRPDLEQMLRQFESQHRDKVRGWVGFSVKTAHRITAGVD 191
LI A P +M D+Q +MLG+G P E +R E +RDK RGWVGF+V +HRITAG D
Sbjct: 475 LIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCD 534
Query: 192 ILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQAFNPF----EESGLGWTFDSAE 247
ILLMPSRFEPCGLNQLYAM YGT+PVVH GGLRDTV+ FNP+ +G GW F
Sbjct: 535 ILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLS 594
Query: 248 ADKLIHALGNCLWTYREYKKSWEGLQKRGMSQDLSWDNAAQQYEEVLVAAKYQW 301
D ++ AL TYREYK+SWEGL +RGM+++ SW+NAA QYE+V +QW
Sbjct: 595 KDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQV-----FQW 643
>AT1G32900.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:11920582-11923506 REVERSE LENGTH=610
Length = 610
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 164/300 (54%), Gaps = 13/300 (4%)
Query: 4 FKFYD----PLGGEHFNIFAAGLKTADRIVTVSHGYAWELKTS-EGGWGLHGIINENDWK 58
F F D P+ G N A + A R++TVS YA EL + + G LH +
Sbjct: 291 FDFMDGYEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMK--T 348
Query: 59 FRGIVNGIDSKDWNPQFDVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVREDVPLI 118
GI+NG+D ++WNP D ++ Y + T+ K K ALQ +GLPV DVP+I
Sbjct: 349 VSGIINGMDVQEWNPSTDKYID----IKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVI 404
Query: 119 GFIGRLDHQKGVDLIAEAIPWMMDQDVQLIMLGTGRPDLEQMLRQFESQHRDKVRGWVGF 178
GFIGRL+ QKG D++ EAI M +VQ+++LGTG+ +E + + E + K G F
Sbjct: 405 GFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKF 464
Query: 179 SVKTAHRITAGVDILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQ-AFNPFEES 237
+V AH ITAG D +++PSRFEPCGL QL+AM YGTVP+V + GGL DTV+ + F
Sbjct: 465 NVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIG 524
Query: 238 GLGWTFDSAEADKLIHALGNCLWTYREYKKS-WEGLQKRGMSQDLSWDNAAQQYEEVLVA 296
+ + D +I Y S + + K M QD SW A+ +E+VL++
Sbjct: 525 RFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLS 584
>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 |
chr4:10082221-10087044 FORWARD LENGTH=1040
Length = 1040
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 162/297 (54%), Gaps = 14/297 (4%)
Query: 5 KFYDPLGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLHGIINENDWKFRGIVN 64
+ D G+ N + ++ + TVS YA E++T+EGG GLH +N + KF GI+N
Sbjct: 735 RMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILN 794
Query: 65 GIDSKDWNPQFDVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVRED-VPLIGFIGR 123
GID+ WNP D L + + + L GK + K AL+K+LGL E PL+G I R
Sbjct: 795 GIDTDSWNPATDPFLKA----QFNAKDLQ-GKEENKHALRKQLGLSSAESRRPLVGCITR 849
Query: 124 LDHQKGVDLIAEAIPWMMDQDVQLIMLGTGR-PDLEQMLRQFESQHR--DKVRGWVGFSV 180
L QKGV LI AI ++ Q ++LG+ P +++ E Q + D VR + +
Sbjct: 850 LVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDE 909
Query: 181 KTAHRITAGVDILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQAFN----PFEE 236
+H I A D+ ++PS FEPCGL Q+ AM YG++P+ GGL D+V + P +
Sbjct: 910 ALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIDDDTIPTQF 969
Query: 237 SGLGWTFDSAEADKLIHALGNCLWTYREYKKSWEGLQKRGMSQDLSWDNAAQQYEEV 293
G+TF +A+ +AL Y++ ++ W L ++ MS D SW ++A QYEE+
Sbjct: 970 QN-GFTFQTADEQGFNYALERAFNHYKKDEEKWMRLVEKVMSIDFSWGSSATQYEEL 1025
>AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 |
chr1:3952460-3956840 FORWARD LENGTH=1042
Length = 1042
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 154/295 (52%), Gaps = 24/295 (8%)
Query: 16 NIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLHGIINENDWKFRGIVNGIDSKDWNPQF 75
N + AD+ TVS YA E+ + +I+ + +KF GI+NGID W+P
Sbjct: 759 NAIGKAMTFADKATTVSPTYAKEVAGN-------SVISAHLYKFHGIINGIDPDIWDPYN 811
Query: 76 DVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVREDVPLIGFIGRLDHQKGVDLIAE 135
D + YT E + GKR K LQ LGL D P++G I RL HQKG+ LI
Sbjct: 812 DNFIP----VPYTSENVVEGKRAAKEELQNRLGLK-SADFPVVGIITRLTHQKGIHLIKH 866
Query: 136 AIPWMMDQDVQLIMLGTG-----RPDLEQMLRQFESQHRDKVRGWVGFSVKTAHRITAGV 190
AI ++++ Q+++LG+ + D + Q S H D+ R + + +H I AG
Sbjct: 867 AIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGA 926
Query: 191 DILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQAFNPFEESGL-------GWTF 243
D +L+PS FEPCGL QL AM YG VPVV GGL DTV + +E G++F
Sbjct: 927 DFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSF 986
Query: 244 DSAEADKLIHALGNCLWTYREYKKSWEGLQKRGMSQDLSWDNAAQQYEEVLVAAK 298
D A+A + +AL + + + ++ + L K M QD SW+ A +Y E+ +A+
Sbjct: 987 DGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYHSAR 1041
>AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840
FORWARD LENGTH=1094
Length = 1094
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 154/295 (52%), Gaps = 24/295 (8%)
Query: 16 NIFAAGLKTADRIVTVSHGYAWELKTSEGGWGLHGIINENDWKFRGIVNGIDSKDWNPQF 75
N + AD+ TVS YA E+ + +I+ + +KF GI+NGID W+P
Sbjct: 811 NAIGKAMTFADKATTVSPTYAKEVAG-------NSVISAHLYKFHGIINGIDPDIWDPYN 863
Query: 76 DVHLTSDGYTNYTLETLHSGKRQCKAALQKELGLPVREDVPLIGFIGRLDHQKGVDLIAE 135
D + YT E + GKR K LQ LGL D P++G I RL HQKG+ LI
Sbjct: 864 DNFIP----VPYTSENVVEGKRAAKEELQNRLGLK-SADFPVVGIITRLTHQKGIHLIKH 918
Query: 136 AIPWMMDQDVQLIMLGTG-----RPDLEQMLRQFESQHRDKVRGWVGFSVKTAHRITAGV 190
AI ++++ Q+++LG+ + D + Q S H D+ R + + +H I AG
Sbjct: 919 AIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGA 978
Query: 191 DILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQAFNPFEESGL-------GWTF 243
D +L+PS FEPCGL QL AM YG VPVV GGL DTV + +E G++F
Sbjct: 979 DFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSF 1038
Query: 244 DSAEADKLIHALGNCLWTYREYKKSWEGLQKRGMSQDLSWDNAAQQYEEVLVAAK 298
D A+A + +AL + + + ++ + L K M QD SW+ A +Y E+ +A+
Sbjct: 1039 DGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYHSAR 1093