Miyakogusa Predicted Gene

Lj2g3v1035930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1035930.1 Non Chatacterized Hit- tr|J3LKG8|J3LKG8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB03G1,67.11,2e-19,no
description,Helix-loop-helix domain; coiled-coil,NULL; HLH,
helix-loop-helix DNA-binding domain,H,CUFF.36064.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26945.1 | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-b...   109   3e-25
AT3G28857.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   107   1e-24
AT5G39860.1 | Symbols: PRE1, BNQ1, BHLH136 | basic helix-loop-he...   105   8e-24
AT5G15160.1 | Symbols: BNQ2, BHLH134 | BANQUO 2 | chr5:4921487-4...   103   3e-23
AT1G74500.1 | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1...    96   5e-21
AT3G47710.1 | Symbols: BNQ3, BHLH161 | BANQUO 3 | chr3:17590729-...    82   8e-17

>AT1G26945.1 | Symbols: KDR | basic helix-loop-helix (bHLH)
          DNA-binding superfamily protein | chr1:9351571-9352474
          FORWARD LENGTH=94
          Length = 94

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 64/70 (91%)

Query: 22 ELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDSP 81
          +LVSKL+ L+PE+R RRSDKVSASKVL ETCNYIR+LHREVDDLS+RLS+LLAS D +S 
Sbjct: 24 DLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDNSA 83

Query: 82 EAAIIRSLIN 91
          EAAIIRSL+N
Sbjct: 84 EAAIIRSLLN 93


>AT3G28857.1 | Symbols:  | basic helix-loop-helix (bHLH)
          DNA-binding family protein | chr3:10855781-10856313
          REVERSE LENGTH=92
          Length = 92

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 63/70 (90%), Gaps = 1/70 (1%)

Query: 22 ELVSKLRQLVPEIRDRR-SDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDS 80
          +LVSKLRQ +PEI +RR SDKVSASKVL ETCNYIR LHREVD+LS+RLSQLL S+D DS
Sbjct: 22 DLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDS 81

Query: 81 PEAAIIRSLI 90
          PEAA+IRSL+
Sbjct: 82 PEAAVIRSLL 91


>AT5G39860.1 | Symbols: PRE1, BNQ1, BHLH136 | basic
          helix-loop-helix (bHLH) DNA-binding family protein |
          chr5:15957689-15958303 FORWARD LENGTH=92
          Length = 92

 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 22 ELVSKLRQLVPEI-RDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDS 80
          +LVSKLRQ++PEI + RRSDK SASKVL ETCNYIR+L+REVD+LSERLSQLL S+D DS
Sbjct: 22 DLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDS 81

Query: 81 PEAAIIRSLI 90
          PEAA+IRSL+
Sbjct: 82 PEAAVIRSLL 91


>AT5G15160.1 | Symbols: BNQ2, BHLH134 | BANQUO 2 |
          chr5:4921487-4922553 REVERSE LENGTH=94
          Length = 94

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 64/71 (90%), Gaps = 1/71 (1%)

Query: 22 ELVSKLRQLVPEIR-DRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDS 80
          +L+SKLRQ +PEIR +RRS+ VSASKVL ETCNYIR+L++E DDLS+RL+QLL SID +S
Sbjct: 23 DLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDPNS 82

Query: 81 PEAAIIRSLIN 91
          P+AA+IRSLIN
Sbjct: 83 PQAAVIRSLIN 93


>AT1G74500.1 | Symbols: ATBS1, TMO7, BS1 | activation-tagged
          BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
          chr1:27998298-27998668 REVERSE LENGTH=93
          Length = 93

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 64/72 (88%), Gaps = 3/72 (4%)

Query: 22 ELVSKLRQLVPEIRD-RRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDS 80
          +L+ KL+QL+PE+RD RRSDKVSA++VL +TCNYIR+LHREVDDLSERLS+LLA  + D+
Sbjct: 24 DLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA--NSDT 81

Query: 81 PEAAIIRSLINQ 92
           +AA+IRSL+ Q
Sbjct: 82 AQAALIRSLLTQ 93


>AT3G47710.1 | Symbols: BNQ3, BHLH161 | BANQUO 3 |
          chr3:17590729-17591455 FORWARD LENGTH=92
          Length = 92

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 59/72 (81%), Gaps = 3/72 (4%)

Query: 22 ELVSKLRQLVPEI-RDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDS 80
          +LV +L +L+PE+  +RRS KVSAS+VL ETC+YIR+L +EVDDLSERLSQLL S   DS
Sbjct: 23 DLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLEST--DS 80

Query: 81 PEAAIIRSLINQ 92
           +AA+IRSL+ Q
Sbjct: 81 AQAALIRSLLMQ 92