Miyakogusa Predicted Gene
- Lj2g3v1034670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1034670.1 tr|G7L6Z5|G7L6Z5_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_8g044020 PE=4
SV=1,58.06,8e-18,GPROTEINBRPT,G-protein beta WD-40 repeat; seg,NULL;
WD_REPEATS_1,WD40 repeat, conserved site; WD40 r,CUFF.36063.1
(436 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 55 8e-08
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 4e-07
AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective / S... 53 5e-07
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 52 6e-07
AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 52 6e-07
AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:867... 49 9e-06
>AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3733406-3739363 FORWARD LENGTH=1021
Length = 1021
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 20/201 (9%)
Query: 184 KVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSK 243
++L +GG+D V LWS+ GK +L GH PV+ SVA + +LV S
Sbjct: 29 RLLLTGGDDYKVNLWSI------GKTTSPMSLCGHTSPVD--SVAFNSEEVLVLAGASSG 80
Query: 244 V-RVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV---DLRTMHKVITIAV 299
V ++WD ++ H ++A+GSS T + D R + T
Sbjct: 81 VIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKG 140
Query: 300 HPSKLYSFDAFP-SKYLICTGSDDRAMLWDIRRNQEPVKPELISELGGHRGPVTCLHMDP 358
H + + + P ++++ G D+ +WD+ + L+ E H GP+ L P
Sbjct: 141 HTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGK------LLHEFKCHEGPIRSLDFHP 194
Query: 359 YK-IITGGRIDECVNVWEVDT 378
+ ++ G D V W+++T
Sbjct: 195 LEFLLATGSADRTVKFWDLET 215
>AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701448-2706910 FORWARD LENGTH=839
Length = 839
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 18/200 (9%)
Query: 184 KVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSK 243
+VL +GGED V LW++ GK +LYGH ++ ++ + L+ + +
Sbjct: 30 RVLVTGGEDHKVNLWAI------GKPNAILSLYGHSSGIDSVTFDASE-GLVAAGAASGT 82
Query: 244 VRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV---DLRTMHKVITIAVH 300
+++WD V++ H + A+GS T + D+R + T H
Sbjct: 83 IKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 301 PSKLYSFDAFP-SKYLICTGSDDRAMLWDIRRNQEPVKPELISELGGHRGPVTCLHMDPY 359
+ P ++++ G D+ +WD+ + L+ E H G + L P+
Sbjct: 143 TRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGK------LLHEFKSHEGKIQSLDFHPH 196
Query: 360 K-IITGGRIDECVNVWEVDT 378
+ ++ G D+ V W+++T
Sbjct: 197 EFLLATGSADKTVKFWDLET 216
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 118/314 (37%), Gaps = 51/314 (16%)
Query: 113 HRARITCMRLFSHDDMSLCRGETQGEQNVLVTSSCDHSIRLWWKG--SCLRCLRGHNGPV 170
H A + C+++ + VLVT DH + LW G + + L GH+ +
Sbjct: 15 HSAAVNCLKI------------GRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 171 XXXXXXXXXXXXXKVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGH 230
++A+G T++LW L E K + TL GH N +SV H
Sbjct: 63 DSVTFDASEG----LVAAGAASGTIKLWDL----EEAK--VVRTLTGHRS--NCVSVNFH 110
Query: 231 K-TSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV--- 286
S S D+ +++WD ++ ++ +G V
Sbjct: 111 PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVW 170
Query: 287 DLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDDRAM-LWDIRRNQEPVKPELISELG 345
DL + H K+ S D P ++L+ TGS D+ + WD+ ELI G
Sbjct: 171 DLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLETF------ELIGSGG 224
Query: 346 GHRGPVTCLHMDP--YKIITGGRIDECVNVWEVDTGVKIRPLLCFSGSKDMG---CDAMA 400
V CL +P ++ G + + WE P+ C G D+G M
Sbjct: 225 TETTGVRCLTFNPDGKSVLCGLQESLKIFSWE--------PIRCHDGV-DVGWSNLSDMN 275
Query: 401 VDGCRIITASYCRN 414
V +++ SY +N
Sbjct: 276 VHEGKLLGCSYNQN 289
>AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective / SCD1
protein (SCD1) | chr1:18139419-18148826 REVERSE
LENGTH=1187
Length = 1187
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 90/242 (37%), Gaps = 25/242 (10%)
Query: 160 LRCLRGHNGPVXXXXXXXXXXXXXKV--------LASGGEDSTVRLWSLGSSGERGKHAL 211
+R L+GH G V V SG D V++W G L
Sbjct: 836 VRVLKGHGGAVTALHSVTRREVCDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE----L 891
Query: 212 KATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXG--APVNMK 269
+ATL GH V +S K +VS S D V VWD + V M
Sbjct: 892 RATLKGHTGTVRAISSDRGK---IVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCVKML 948
Query: 270 CHESLLYVAAGSSVTAVDLRTMHKVITIAVHPSKLYSFDAFPSK-YLICTGSDDRAMLWD 328
E +L A +V D+RT V T+ S + S + S L G D A +WD
Sbjct: 949 SGERVLTAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVANIWD 1008
Query: 329 IRRNQEPVKPELISELGGHRGPVTCLHMDPYKIITGGRIDECVNVWEVDTGVKIRPLLCF 388
IR ++ + +L GH + + M +ITG D VW V G L C
Sbjct: 1009 IRSGKQ------MHKLKGHTKWIRSIRMVEDTLITGSD-DWTARVWSVSRGSCDAVLACH 1061
Query: 389 SG 390
+G
Sbjct: 1062 AG 1063
>AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=837
Length = 837
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 95/253 (37%), Gaps = 37/253 (14%)
Query: 113 HRARITCMRLFSHDDMSLCRGETQGEQNVLVTSSCDHSIRLWWKG--SCLRCLRGHNGPV 170
H A + C+++ + VLVT DH + LW G + + L GH+ +
Sbjct: 15 HSAAVNCLKI------------GRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 171 XXXXXXXXXXXXXKVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGH 230
++A+G T++LW L E K + TL GH N +SV H
Sbjct: 63 DSVTFDASEV----LVAAGAASGTIKLWDL----EEAK--IVRTLTGHRS--NCISVDFH 110
Query: 231 K-TSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV--- 286
S S D+ +++WD ++ +V +G V
Sbjct: 111 PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVW 170
Query: 287 DLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDDRAM-LWDIRRNQEPVKPELISELG 345
DL + H ++ S D P ++L+ TGS DR + WD+ ELI G
Sbjct: 171 DLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETF------ELIGSGG 224
Query: 346 GHRGPVTCLHMDP 358
V CL +P
Sbjct: 225 PETAGVRCLSFNP 237
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 18/200 (9%)
Query: 184 KVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSK 243
+VL +GGED V LW++ GK +LYGH ++ ++ + L+ + +
Sbjct: 30 RVLVTGGEDHKVNLWAI------GKPNAILSLYGHSSGIDSVTFDASEV-LVAAGAASGT 82
Query: 244 VRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV---DLRTMHKVITIAVH 300
+++WD +++ H + A+GS T + D+R + T H
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 301 PSKLYSFDAFP-SKYLICTGSDDRAMLWDIRRNQEPVKPELISELGGHRGPVTCLHMDPY 359
+ P ++++ G D+ +WD+ +L++E H G + L P+
Sbjct: 143 TRGVNVLRFTPDGRWVVSGGEDNIVKVWDL------TAGKLLTEFKSHEGQIQSLDFHPH 196
Query: 360 K-IITGGRIDECVNVWEVDT 378
+ ++ G D V W+++T
Sbjct: 197 EFLLATGSADRTVKFWDLET 216
>AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=836
Length = 836
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 18/200 (9%)
Query: 184 KVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSK 243
+VL +GGED V LW++ GK +LYGH ++ ++ + L+ + +
Sbjct: 30 RVLVTGGEDHKVNLWAI------GKPNAILSLYGHSSGIDSVTFDASEV-LVAAGAASGT 82
Query: 244 VRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV---DLRTMHKVITIAVH 300
+++WD +++ H + A+GS T + D+R + T H
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 301 PSKLYSFDAFP-SKYLICTGSDDRAMLWDIRRNQEPVKPELISELGGHRGPVTCLHMDPY 359
+ P ++++ G D+ +WD+ +L++E H G + L P+
Sbjct: 143 TRGVNVLRFTPDGRWVVSGGEDNIVKVWDL------TAGKLLTEFKSHEGQIQSLDFHPH 196
Query: 360 K-IITGGRIDECVNVWEVDT 378
+ ++ G D V W+++T
Sbjct: 197 EFLLATGSADRTVKFWDLET 216
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 95/253 (37%), Gaps = 37/253 (14%)
Query: 113 HRARITCMRLFSHDDMSLCRGETQGEQNVLVTSSCDHSIRLWWKG--SCLRCLRGHNGPV 170
H A + C+++ + VLVT DH + LW G + + L GH+ +
Sbjct: 15 HSAAVNCLKI------------GRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 171 XXXXXXXXXXXXXKVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGH 230
++A+G T++LW L E K + TL GH N +SV H
Sbjct: 63 DSVTFDASEV----LVAAGAASGTIKLWDL----EEAK--IVRTLTGHRS--NCISVDFH 110
Query: 231 K-TSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV--- 286
S S D+ +++WD ++ +V +G V
Sbjct: 111 PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVW 170
Query: 287 DLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDDRAM-LWDIRRNQEPVKPELISELG 345
DL + H ++ S D P ++L+ TGS DR + WD+ ELI G
Sbjct: 171 DLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETF------ELIGSGG 224
Query: 346 GHRGPVTCLHMDP 358
V CL +P
Sbjct: 225 PETAGVRCLSFNP 237
>AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 |
chr5:8677117-8682058 FORWARD LENGTH=669
Length = 669
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 140 NVLVTSSCDHSIRLW--WKGSCLRCLRGHNGPVXXXXXXXXXXXXXKVLASGGEDSTVRL 197
N + T S D ++RLW G C+R GH V + +ASG ED T+ +
Sbjct: 515 NYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDG----RYMASGDEDGTIMM 570
Query: 198 WSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVRVWD 248
W L ++ L GH V LS +G + SLL S S D V++WD
Sbjct: 571 WDLSTA------RCITPLMGHNSCVWSLSYSG-EGSLLASGSADCTVKLWD 614
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 30/225 (13%)
Query: 185 VLASGGEDSTVRLWSLGSSGERGKHALKAT------------------LYGHVKPVNFLS 226
++A G DS++++W + G+ G AL+A L GH PV + +
Sbjct: 366 LVAGGFSDSSIKVWDMAKIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGPV-YSA 424
Query: 227 VAGHKTSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV 286
++S S D+ +R+W + + Y A+ S
Sbjct: 425 TFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTA 484
Query: 287 DLRTMHKVITIAVHPSKLYSFDAF---PSKYLICTGSDDRAM-LWDIRRNQEPVKPELIS 342
+ +M ++ + + L D P+ I TGS D+ + LWD++ E +
Sbjct: 485 RIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTG------ECVR 538
Query: 343 ELGGHRGPVTCLHMDP-YKIITGGRIDECVNVWEVDTGVKIRPLL 386
GHR V L M P + + G D + +W++ T I PL+
Sbjct: 539 IFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLM 583