Miyakogusa Predicted Gene

Lj2g3v1034630.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1034630.2 Non Chatacterized Hit- tr|K3YPP0|K3YPP0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016232,28.52,8e-17,seg,NULL,CUFF.36071.2
         (676 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28720.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   738   0.0  
AT5G58100.1 | Symbols:  | unknown protein; INVOLVED IN: pollen e...    96   1e-19
AT4G16180.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   8e-09

>AT3G28720.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins
           in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95;
           Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes
           - 732 (source: NCBI BLink). | chr3:10782276-10784339
           FORWARD LENGTH=687
          Length = 687

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/544 (65%), Positives = 432/544 (79%), Gaps = 14/544 (2%)

Query: 136 QISQTLRSLLHSTTASLRSTLLPIPFSPIDEIIKQHFLSSEPLHNQHHLYLINLPNSDPK 195
           ++  TL++L+ STT+SLRS LL I ++PIDEIIKQ +   +      ++YLI+L      
Sbjct: 155 RLDSTLKTLISSTTSSLRSNLLSIQYNPIDEIIKQEYEKEKHGDGGVYIYLISLG----- 209

Query: 196 PSDHKPYAYTYSPSAADSSPSFTNCLGTFWTSDQRYFWIDLAAGPVDYGPAISGDGVIPR 255
            S  KPYAY+YS    DSS  FT CLG+ WT   RY WIDL+AGPVDYGPA+SGDGV+PR
Sbjct: 210 -SQAKPYAYSYS--HGDSSAGFTKCLGSIWTGKDRYLWIDLSAGPVDYGPALSGDGVLPR 266

Query: 256 GEFHPFATLHSLRPKSDKALVADIASLISSAYQVFLAPSLRIPVVFDNTLVVQFIHIYSG 315
           GEFHP A LH  RPKS+KAL+AD+ASL+ +AYQV + PSLRIPV F++TLVVQFIH+Y  
Sbjct: 267 GEFHPLAALHG-RPKSEKALLADLASLVYNAYQVLIVPSLRIPVYFEDTLVVQFIHVYGS 325

Query: 316 EEKDKDLSGLDWKAIEKSFRDEGKGNGLLLGDQKLSFNVYDIKYSECPVCSFAVSRAMNS 375
           E KD   SGLD + ++++F DE +  GLLLG+QKLSF  Y + Y EC +CSFAVSR MNS
Sbjct: 326 EVKDS--SGLDLEFVKRTFMDEAESGGLLLGEQKLSFKSYSVNYRECSICSFAVSRGMNS 383

Query: 376 FTSRFLFDNYTLIVSEYLDSKRLHQILSDSADEVRKMGGVPEED---FGRVVPVYVFDLD 432
           +TSRFLFDNYTLIVSEYLDSK +H+ L+DSA+E+R++ G+ EE+   F RV+PVYVFDLD
Sbjct: 384 YTSRFLFDNYTLIVSEYLDSKHMHRALTDSAEELRRVAGIVEEEGNEFARVLPVYVFDLD 443

Query: 433 HTSLLLLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFTHTRELERPLVGSILQSM 492
             + LLLDRYHQSVAF+DMVIAVRTR TQTVSDY+CNGRHVF HTR+LERPLVGSILQSM
Sbjct: 444 INTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDLERPLVGSILQSM 503

Query: 493 WGVSPTHMSWSPRHNSTLVDYTWSMGQTPFGPFSQLSSLSFVQKDAAKRNVLLTSLNYSI 552
           WGVS TH++WSPRHN+TLVDYTWS+GQTPFGPFS +SSLSFVQKDAAKRNV+LTSLN +I
Sbjct: 504 WGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAKRNVILTSLNTTI 563

Query: 553 SSAMDVLQSIETHGGDRKLLKQKQHAEFVQRLNLFKYKLNKAVSALSHLDFEMALFYYRS 612
           +SA+DV+ S   +GGD  L KQ +H+EF+QR NL +YKL+K VSALSH +FEMALFY RS
Sbjct: 564 TSAIDVIDSAVAYGGDVILRKQNRHSEFMQRWNLMQYKLDKTVSALSHNEFEMALFYLRS 623

Query: 613 SDHDLYAIHSIVYHASQEIEASLVCFKDPAFPWXXXXXXXXXXXXXXYVYAKRDKLFRNK 672
           + HDLY++HS+VY ASQ +EASL CFKDP FPW              YV++KRD+LFRNK
Sbjct: 624 ASHDLYSVHSVVYLASQRVEASLNCFKDPPFPWGTVSVSGFGLMAVGYVFSKRDRLFRNK 683

Query: 673 RKQF 676
           RKQF
Sbjct: 684 RKQF 687


>AT5G58100.1 | Symbols:  | unknown protein; INVOLVED IN: pollen
           exine formation; EXPRESSED IN: 19 plant structures;
           EXPRESSED DURING: 8 growth stages; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:23507828-23514863 FORWARD LENGTH=945
          Length = 945

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 13/287 (4%)

Query: 307 VQFIHIYSGEEKDKDLSGL--DWKAIEKSFRDEGKGNGLLLGDQKLSFNVYDIKYSECPV 364
           + F  ++  +EK + +  L  D KA+          + LLL  QK  F+ + +  SE P 
Sbjct: 579 ISFQLVFITQEKVRQIKQLPVDLKALMDGL------SSLLLPSQKPLFSQHMLTLSEDPA 632

Query: 365 CSFAVSRAMNSFTSRFLFDN--YTLIVSEYLDSKRLHQILSDSADEVRKMGGVPEEDFGR 422
            + A S A  +     L  N  Y   V  YLDS  L   L    D     GG        
Sbjct: 633 LAMAFSVARRAAAVPLLLVNGTYRKTVRSYLDSSILQYQLQRVNDHTSLKGGHAHSRSTL 692

Query: 423 VVPVYVFDLDHTSLLLLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFTHTRELER 482
            +P+  F L     LL+D+++Q+ A  +MV+ V++  +   S   CNGR +    R   +
Sbjct: 693 EIPI--FWLISGDPLLIDKHYQAKALSNMVVVVQSEASSWESHLQCNGRSLLWDLRSPVK 750

Query: 483 PLVGSILQSMWGVSPTHMSWSPRHNSTLVDYTWSMGQTPFGPFSQLSSLSFVQKDAAKRN 542
             + S+ + + G+ P H+ +S  H S + D+TWS+G  PF   SQ   LS  Q D   R+
Sbjct: 751 AAMASVAEHLAGLLPLHLVYSVAHESAIEDWTWSVGCNPFSVTSQGWLLSQFQSDTIARS 810

Query: 543 VLLTSLNYSISSAMDVLQSIETHGGDRKLLKQKQHAEFVQRLNLFKY 589
            ++T+L  SI +    +  +     ++K  K  Q  E  + +N +KY
Sbjct: 811 YMITALEESIQAVNSGIHLLRLERTNKKTFKLFQSRE-RELMNKYKY 856


>AT4G16180.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5
           proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 4; Viruses - 0; Other
           Eukaryotes - 1 (source: NCBI BLink). |
           chr4:9165365-9170323 REVERSE LENGTH=820
          Length = 820

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 1/144 (0%)

Query: 422 RVVPVYVFDL-DHTSLLLLDRYHQSVAFKDMVIAVRTRNTQTVSDYSCNGRHVFTHTREL 480
           RV+PV++  L D   +L+++      A  D+VI ++  N +    Y            ++
Sbjct: 529 RVIPVFILSLADVDPMLMMEDESLVWASSDVVIVLQHLNEKIPLSYVSETERQHAVPSQV 588

Query: 481 ERPLVGSILQSMWGVSPTHMSWSPRHNSTLVDYTWSMGQTPFGPFSQLSSLSFVQKDAAK 540
           +R ++  I  ++ GVS  +   S  H   + ++ W+ G  PFGPFS +S +S + +D A 
Sbjct: 589 QRHVLAGIASALGGVSAPYEKTSHAHERPITNWLWAAGCHPFGPFSNVSLISQMLQDVAL 648

Query: 541 RNVLLTSLNYSISSAMDVLQSIET 564
           RN +   ++ ++    +  ++++ 
Sbjct: 649 RNTIYARVDSALRKIRETSEAVQN 672