Miyakogusa Predicted Gene
- Lj2g3v1034620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1034620.1 Non Chatacterized Hit- tr|I1J7R6|I1J7R6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,89.55,0,PH
domain-like,NULL; HMG-box,High mobility group, superfamily; no
description,High mobility group, s,CUFF.36066.1
(642 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility gr... 774 0.0
AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch... 60 4e-09
AT3G51880.4 | Symbols: HMGB1 | high mobility group B1 | chr3:192... 60 6e-09
AT3G51880.3 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch... 60 6e-09
AT3G51880.1 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch... 60 6e-09
AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob... 59 1e-08
AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob... 59 1e-08
AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob... 59 1e-08
AT1G04880.1 | Symbols: | HMG (high mobility group) box protein ... 56 7e-08
AT4G11080.1 | Symbols: | HMG (high mobility group) box protein ... 54 3e-07
AT4G23800.1 | Symbols: | HMG (high mobility group) box protein ... 52 1e-06
AT4G23800.2 | Symbols: | HMG (high mobility group) box protein ... 52 1e-06
AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | high mobility group ... 52 1e-06
AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | high mobility group ... 52 1e-06
AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | high mobility group ... 52 1e-06
>AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group
| chr3:10784954-10788498 FORWARD LENGTH=646
Length = 646
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/472 (79%), Positives = 426/472 (90%), Gaps = 1/472 (0%)
Query: 5 GHLFNNITLGGRGGTNPGQIKIFSGGIAWKRQGGGKSIEIDKADIMGVTWMKVPRTNQLG 64
GH FNNI+L GRGG NPG +KI SGGI WK+QGGGK++E+D++DI+ V+W KV ++NQLG
Sbjct: 4 GHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSNQLG 63
Query: 65 VQIKDGLYYKFTGFRDQDVVSLTSFFQNNFGISVDEKQLSVSGRNWGEVDLNGNMLAFMV 124
V+ KDGLYYKF GFRDQDV SL+SFFQ+++G + DEKQLSVSGRNWGEVDL+GN L F+V
Sbjct: 64 VKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLTFLV 123
Query: 125 GSKQSFEVSLADVSQTTLQGKNDVMLEFHVDDTTGANEKDSLMELSFHIPNSNTQYVGDE 184
GSKQ+FEVSLADVSQT LQGKNDV LEFHVDDT GANEKDSLME+SFHIPNSNTQ+VGDE
Sbjct: 124 GSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDE 183
Query: 185 NHTPAQVFRDKIMSMADVGAGGEDSVVTFDGIAVLTPRGRYSVELHLSFLRLQGQANDFK 244
N P+QVF D I++MADV G ED+VVTF+ IA+LTPRGRY+VELHLSFLRLQGQANDFK
Sbjct: 184 NRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQANDFK 243
Query: 245 IQYSSVVRLFLLPKSNQPHTFVIVSLDPPIRKGQTLYPHIVMQFETDVVFQSELAINEDL 304
IQYSSVVRLFLLPKSNQPHTFV++SLDPPIRKGQT+YPHIVMQFETD V +SEL+I+++L
Sbjct: 244 IQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSISDEL 303
Query: 305 YNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCLDGYAVKSSLKAEDGILY 364
NTK+KDKLE SYKGLIHEVFTT+LR LSGAK+TKPGKFRS DG+AVKSSLKAEDG+LY
Sbjct: 304 MNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDGVLY 363
Query: 365 PLEKSFFFLPKPPTLILHEEVDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNE 424
PLEK FFFLPKPPTLILH+E+DYVEFERHAAGG+NMHYFDLLIRLK++ EHLFRNIQRNE
Sbjct: 364 PLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQRNE 423
Query: 425 YHNLYSFIREKGLKIMNLGGAQPTVGMAQVL-ENDDDDAVDPHLERIKNEAG 475
YHNLY+FI KGLKIMNLGGA G+A VL +NDDDDAVDPHL RI+N+A
Sbjct: 424 YHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAA 475
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 75/82 (91%)
Query: 560 RAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARADKKRYM 619
RAMSGFMFFSQMER+N+KK +PGI+F +VG+VLG+KW++MS ++KEPYE KA+ DK+RY
Sbjct: 564 RAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYK 623
Query: 620 DEISGYKNPQPMNVDSGNESDS 641
DEIS YKNPQPMNVDSGN+SDS
Sbjct: 624 DEISDYKNPQPMNVDSGNDSDS 645
>AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=185
Length = 185
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKRA S F F + R KK NP + + + VG+ G+KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 613 ADKKRYMDEISGY 625
K Y ++ Y
Sbjct: 109 KRKAEYEKQMDAY 121
>AT3G51880.4 | Symbols: HMGB1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=161
Length = 161
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKRA S F F + R KK NP + + + VG+ G+KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 613 ADKKRYMDEISGY 625
K Y ++ Y
Sbjct: 109 KRKAEYEKQMDAY 121
>AT3G51880.3 | Symbols: HMGB1, NFD1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=178
Length = 178
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKRA S F F + R KK NP + + + VG+ G+KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 613 ADKKRYMDEISGY 625
K Y ++ Y
Sbjct: 109 KRKAEYEKQMDAY 121
>AT3G51880.1 | Symbols: HMGB1, NFD1 | high mobility group B1 |
chr3:19247241-19248491 REVERSE LENGTH=178
Length = 178
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGI-SFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKRA S F F + R KK NP + + + VG+ G+KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 613 ADKKRYMDEISGY 625
K Y ++ Y
Sbjct: 109 KRKAEYEKQMDAY 121
>AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7177282-7178487 FORWARD
LENGTH=143
Length = 143
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKR S F F + RE KK NP S VG+ G+KWK +S EK PY KA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 613 ADKKRYMDEISGY 625
K Y I Y
Sbjct: 94 KRKVEYEKNIKAY 106
>AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7177282-7178487 FORWARD
LENGTH=144
Length = 144
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKR S F F + RE KK NP S VG+ G+KWK +S EK PY KA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 613 ADKKRYMDEISGY 625
K Y I Y
Sbjct: 94 KRKVEYEKNIKAY 106
>AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7177282-7178487 FORWARD
LENGTH=142
Length = 142
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKR S F F + RE KK NP S VG+ G+KWK +S EK PY KA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 613 ADKKRYMDEISGY 625
K Y I Y
Sbjct: 94 KRKVEYEKNIKAY 106
>AT1G04880.1 | Symbols: | HMG (high mobility group) box protein
with ARID/BRIGHT DNA-binding domain |
chr1:1376106-1378264 REVERSE LENGTH=448
Length = 448
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
DP+ PK SG+ FF + LK +PG D+ R++GE W K++ +EK Y+ KA
Sbjct: 259 DPDHPKPNRSGYNFFFAEQHARLKPLHPGKD-RDISRMIGELWNKLNEDEKLIYQGKAME 317
Query: 614 DKKRYMDEISGYK 626
DK+RY E+ Y+
Sbjct: 318 DKERYRTEMEDYR 330
>AT4G11080.1 | Symbols: | HMG (high mobility group) box protein |
chr4:6760898-6763272 REVERSE LENGTH=446
Length = 446
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
DP PK+ +S ++ ++ R LK N + +V ++ GE+WK +S E+K PY+ A+
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGENKSV--IEVAKMAGEEWKNLSEEKKAPYDQMAKK 299
Query: 614 DKKRYMDEISGYK 626
+K+ Y+ E+ GYK
Sbjct: 300 NKEIYLQEMEGYK 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
D KR + ++ + + +KK NP F + +LG KWK +S EEK+PYE K +A
Sbjct: 125 DCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQA 184
Query: 614 DKKRYMDEISGYK 626
DK+ Y+ I+ K
Sbjct: 185 DKEAYLQVITKEK 197
>AT4G23800.1 | Symbols: | HMG (high mobility group) box protein |
chr4:12390228-12392516 FORWARD LENGTH=456
Length = 456
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
DPN PK+ S + FS+ ER+ L + PG + V ++ KWK++S EEK+ Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAK 434
Query: 614 DKKRYMDEISGY 625
+ Y E+ Y
Sbjct: 435 LMEAYKKEVEAY 446
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
DP PK +S F+ ++ R L++ N + +V ++ GE+WK +S ++K PYE A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKVAKK 308
Query: 614 DKKRYMDEISGYK 626
+K+ Y+ + YK
Sbjct: 309 NKETYLQAMEEYK 321
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 559 KRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARADKKRY 618
KR S ++ + + + +KK NP F + +LG KWK +S E+K+PYE + + +K+ Y
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAY 198
Query: 619 MDEISGYK 626
+ I+ K
Sbjct: 199 LQVIAKEK 206
>AT4G23800.2 | Symbols: | HMG (high mobility group) box protein |
chr4:12390228-12392516 FORWARD LENGTH=450
Length = 450
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
DPN PK+ S + FS+ ER+ L + PG + V ++ KWK++S EEK+ Y KA
Sbjct: 369 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAK 428
Query: 614 DKKRYMDEISGY 625
+ Y E+ Y
Sbjct: 429 LMEAYKKEVEAY 440
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARA 613
DP PK +S F+ ++ R L++ N + +V ++ GE+WK +S ++K PYE A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKVAKK 308
Query: 614 DKKRYMDEISGYK 626
+K+ Y+ + YK
Sbjct: 309 NKETYLQAMEEYK 321
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 559 KRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARADKKRY 618
KR S ++ + + + +KK NP F + +LG KWK +S E+K+PYE + + +K+ Y
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAY 198
Query: 619 MDEISGYK 626
+ I+ K
Sbjct: 199 LQVIAKEK 206
>AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | high mobility group B4
| chr2:7642486-7643468 REVERSE LENGTH=134
Length = 134
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPG-ISFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKR S F F + R+ NP S VG+ G +WK M+ E+K PY KA
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 613 ADKKRYMDEISGY 625
+ K Y+ + Y
Sbjct: 91 SRKTEYIKNVQQY 103
>AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | high mobility group B4
| chr2:7642486-7643468 REVERSE LENGTH=138
Length = 138
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPG-ISFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKR S F F + R+ NP S VG+ G +WK M+ E+K PY KA
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 613 ADKKRYMDEISGY 625
+ K Y+ + Y
Sbjct: 91 SRKTEYIKNVQQY 103
>AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | high mobility group B4
| chr2:7642486-7643468 REVERSE LENGTH=138
Length = 138
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 554 DPNAPKRAMSGFMFFSQMERENLKKTNPG-ISFTDVGRVLGEKWKKMSTEEKEPYEVKAR 612
DPN PKR S F F + R+ NP S VG+ G +WK M+ E+K PY KA
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 613 ADKKRYMDEISGY 625
+ K Y+ + Y
Sbjct: 91 SRKTEYIKNVQQY 103