Miyakogusa Predicted Gene

Lj2g3v1034410.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1034410.2 Non Chatacterized Hit- tr|I1N5X8|I1N5X8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,80.54,0,CRS1_YhbY,RNA-binding, CRM domain; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.36052.2
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3...   211   2e-55
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c...   131   2e-31
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai...   129   8e-31
AT4G29750.1 | Symbols:  | CRS1 / YhbY (CRM) domain-containing pr...   124   3e-29
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl...   121   2e-28
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c...   117   3e-27

>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
           chr3:139033-143477 FORWARD LENGTH=1011
          Length = 1011

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 106/124 (85%)

Query: 27  SSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDAD 86
           S  +K  KP L QGVG+P+KVRFQLPGE +L E+AD LL GLGPRFTDWW Y+PLPVD D
Sbjct: 295 SITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGD 354

Query: 87  LLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIK 146
           LLPAVVP YR+PFRLLPYGV PKLTDDEMTT+RRL RP+P HFALGRNR LQGLA AI+K
Sbjct: 355 LLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVK 414

Query: 147 LWER 150
           LWE+
Sbjct: 415 LWEK 418


>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
           chr4:8337390-8341057 REVERSE LENGTH=907
          Length = 907

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 75/99 (75%)

Query: 52  PGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLT 111
           P E E  ++ + LL GLGPR+TDW G  PLPVDADLLP +VPGY  PFR LPYGV+  L 
Sbjct: 365 PQEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLG 424

Query: 112 DDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
             E T+LRR++  +P HFALGR+R+LQGLA A++KLW++
Sbjct: 425 TKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQK 463


>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
           domain-containing protein | chr3:6313572-6317584 FORWARD
           LENGTH=848
          Length = 848

 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 85/124 (68%), Gaps = 2/124 (1%)

Query: 27  SSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDAD 86
           ++    S P +I+     N +R +   E E+  + +SLL  LGPRF +WWG   LPVDAD
Sbjct: 361 NAKDNQSAPLVIKDPIIKNPIRKENMTEEEV--EFNSLLDSLGPRFQEWWGTGVLPVDAD 418

Query: 87  LLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIK 146
           LLP  +PGY+ PFRLLP G++  LT+ EMT LR++ + +P HFALGRNR  QGLAAAI++
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478

Query: 147 LWER 150
           +WE+
Sbjct: 479 IWEK 482


>AT4G29750.1 | Symbols:  | CRS1 / YhbY (CRM) domain-containing
           protein | chr4:14569728-14572962 FORWARD LENGTH=841
          Length = 841

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 55  AELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDE 114
           +EL E  D LL  +GPRF DW G  P PVDADLLP  V GYR PFR+LP GVKP L++ E
Sbjct: 377 SELCELND-LLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTE 435

Query: 115 MTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLW 148
           MT +RRL+R  P HFALGR+R+LQGLA A++KLW
Sbjct: 436 MTEMRRLARTSPPHFALGRSRELQGLAKAMVKLW 469


>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
           splicing factor CRS1 | chr5:5279884-5282898 FORWARD
           LENGTH=720
          Length = 720

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 67/91 (73%)

Query: 60  DADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLR 119
           +AD LL GLGPR+ DWW   P PVDADLLP VV GY  P R  P   + KLTD+E+T LR
Sbjct: 311 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 370

Query: 120 RLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
            +++P+P HF LGRN  LQGLA+AI+KLWE+
Sbjct: 371 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEK 401


>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
           chr3:8203548-8207243 FORWARD LENGTH=881
          Length = 881

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 63/82 (76%)

Query: 69  GPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSH 128
           GPRF DW G  PLPVDADLLP  +P Y  PFR+LPYGV+  L   E T LRRL+R IP H
Sbjct: 382 GPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPH 441

Query: 129 FALGRNRKLQGLAAAIIKLWER 150
           FALGR+R+LQGLA A+++LWE+
Sbjct: 442 FALGRSRQLQGLATAMVRLWEK 463