Miyakogusa Predicted Gene

Lj2g3v1034410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1034410.1 Non Chatacterized Hit- tr|J3LYN5|J3LYN5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,60.32,0.0000000000007,no description,RNA-binding, CRM
domain; seg,NULL; CRM,RNA-binding, CRM domain; SUBFAMILY NOT
NAMED,N,CUFF.36052.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3...   271   3e-73
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai...   166   1e-41
AT4G29750.1 | Symbols:  | CRS1 / YhbY (CRM) domain-containing pr...   161   3e-40
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c...   155   2e-38
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c...   149   9e-37
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl...   122   2e-28

>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
           chr3:139033-143477 FORWARD LENGTH=1011
          Length = 1011

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 149/205 (72%), Gaps = 9/205 (4%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKRTHD+LE KTGGLV+WRSGSKI+LYRG +Y+YPYF+SD         D          
Sbjct: 222 MKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDR--------DLAHEAASGAS 273

Query: 61  XXXXXXXHSSETNSEIYAGHSSYS-KTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLL 119
                   S E  S   +   S + K  KP L QGVG+P+KVRFQLPGE +L E+AD LL
Sbjct: 274 SMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLL 333

Query: 120 VGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPI 179
            GLGPRFTDWW Y+PLPVD DLLPAVVP YR+PFRLLPYGV PKLTDDEMTT+RRL RP+
Sbjct: 334 EGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPL 393

Query: 180 PSHFALGRNRKLQGLAAAIIKLWER 204
           P HFALGRNR LQGLA AI+KLWE+
Sbjct: 394 PCHFALGRNRNLQGLAVAIVKLWEK 418


>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
           domain-containing protein | chr3:6313572-6317584 FORWARD
           LENGTH=848
          Length = 848

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 20/204 (9%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MK  H+++ER+TGG+V+WR+GS +++YRG DYK P  +S+ ++     G  E        
Sbjct: 299 MKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMA-----GPKE-------- 345

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                     + +S      ++    S P +I+     N +R +   E E+  + +SLL 
Sbjct: 346 -----TLFVPDVSSAGDEATNAKDNQSAPLVIKDPIIKNPIRKENMTEEEV--EFNSLLD 398

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
            LGPRF +WWG   LPVDADLLP  +PGY+ PFRLLP G++  LT+ EMT LR++ + +P
Sbjct: 399 SLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLP 458

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRNR  QGLAAAI+++WE+
Sbjct: 459 CHFALGRNRNHQGLAAAILQIWEK 482


>AT4G29750.1 | Symbols:  | CRS1 / YhbY (CRM) domain-containing
           protein | chr4:14569728-14572962 FORWARD LENGTH=841
          Length = 841

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 119/203 (58%), Gaps = 34/203 (16%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKRTH++LE+KTGGLV+WRSGS ++LYRG  YK     +                     
Sbjct: 300 MKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQT--------------------- 338

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKV-RFQLPGEAELAEDADSLL 119
                  ++ E N EI+      S  ++  + +    P  V + QL   +EL E  D LL
Sbjct: 339 ---FIKQNNLEANPEIH-----RSVEARDYVQEDGNYPKNVPKEQL---SELCELND-LL 386

Query: 120 VGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPI 179
             +GPRF DW G  P PVDADLLP  V GYR PFR+LP GVKP L++ EMT +RRL+R  
Sbjct: 387 DEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTS 446

Query: 180 PSHFALGRNRKLQGLAAAIIKLW 202
           P HFALGR+R+LQGLA A++KLW
Sbjct: 447 PPHFALGRSRELQGLAKAMVKLW 469


>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
           chr4:8337390-8341057 REVERSE LENGTH=907
          Length = 907

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 121/218 (55%), Gaps = 46/218 (21%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M+R H++LERKTGGLV+WRSG+ I LY   +YK         +RD               
Sbjct: 278 MRRMHEILERKTGGLVIWRSGTSIALY---NYK------GGSNRD--------------- 313

Query: 61  XXXXXXXHSSETNSEIYAGH----SSYSKTSKPALIQGVGTP----------NKVRFQLP 106
                   S   N ++Y       SS   ++    +Q V  P          NK R   P
Sbjct: 314 -------GSGNMNKQVYRRAERLPSSLPTSTVDQSVQLVNLPQLEKEPTVVGNKDRTS-P 365

Query: 107 GEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTD 166
            E E  ++ + LL GLGPR+TDW G  PLPVDADLLP +VPGY  PFR LPYGV+  L  
Sbjct: 366 QEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGT 425

Query: 167 DEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 204
            E T+LRR++  +P HFALGR+R+LQGLA A++KLW++
Sbjct: 426 KEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQK 463


>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
           chr3:8203548-8207243 FORWARD LENGTH=881
          Length = 881

 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 120/206 (58%), Gaps = 21/206 (10%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDA--EQHMXXX 58
           M++ H++LE+KTGGLV+WRSG+ I LYRG  Y+ P    +   R+E   +A  E H    
Sbjct: 277 MRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENH---- 332

Query: 59  XXXXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSL 118
                       ET + +     S  K   P L Q   +  K + Q     E  ++ D L
Sbjct: 333 -----------DETTTMV---DKSDEKVHLPQLEQETTSVEK-KDQTSPVVEYEDELDEL 377

Query: 119 LVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRP 178
           L  LGPRF DW G  PLPVDADLLP  +P Y  PFR+LPYGV+  L   E T LRRL+R 
Sbjct: 378 LDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARS 437

Query: 179 IPSHFALGRNRKLQGLAAAIIKLWER 204
           IP HFALGR+R+LQGLA A+++LWE+
Sbjct: 438 IPPHFALGRSRQLQGLATAMVRLWEK 463


>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
           splicing factor CRS1 | chr5:5279884-5282898 FORWARD
           LENGTH=720
          Length = 720

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 67/91 (73%)

Query: 114 DADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLR 173
           +AD LL GLGPR+ DWW   P PVDADLLP VV GY  P R  P   + KLTD+E+T LR
Sbjct: 311 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 370

Query: 174 RLSRPIPSHFALGRNRKLQGLAAAIIKLWER 204
            +++P+P HF LGRN  LQGLA+AI+KLWE+
Sbjct: 371 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEK 401