Miyakogusa Predicted Gene

Lj2g3v1022600.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022600.4 CUFF.35985.4
         (316 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28460.1 | Symbols:  | methyltransferases | chr3:10672673-106...   373   e-104

>AT3G28460.1 | Symbols:  | methyltransferases |
           chr3:10672673-10674297 REVERSE LENGTH=314
          Length = 314

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/273 (68%), Positives = 212/273 (77%), Gaps = 4/273 (1%)

Query: 44  SLLISSYTKSGNGLASEDKKILLERYGYDADADEYFSQSSPKSKRIKEQPRTRGGKQVQD 103
           + ++SS   SG GLASEDKK+LLERYGYDA+ D  F   S K++R +E  +  G    Q 
Sbjct: 44  TFVVSSRKNSGTGLASEDKKLLLERYGYDANDD--FGSQSKKARRKEE--KMSGRNSQQV 99

Query: 104 PPEGPKPHRTTHKLLQVLGGTARRKKLLSPKGMDVRPMMEVVKGATFDILQAAGGSPASL 163
                   RTTH+LLQVL GTA+RKKLLS KGMDVRPMMEVVKGA F ILQAAGG P SL
Sbjct: 100 EEVVVVQPRTTHRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSL 159

Query: 164 RPGRWLDLYSGTGSVGIEALSRGCCEVHFVEMDPWVVSDVLRPNLEGTGFLDASVIHTVT 223
           RPGRWLDLYSGTGSVGIEA+SRGC E HFVEMDPWVVS+VL+PNLE TGF+DASVIHT  
Sbjct: 160 RPGRWLDLYSGTGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTAR 219

Query: 224 VEKFFERGKQFVGNYGPFDYISVTPPYTQVDYGVLMRQISESSLVGEDAFIVVEYPSKTD 283
           VE F ER  + VG  G FDYISVTPPY +VDY VLM QI++S  +GE+ FI+VEYPS+T 
Sbjct: 220 VENFLERADKLVGKDGVFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTT 279

Query: 284 MLDSCGHLVKITDRRFGRTLLAIYGPTWAQKKR 316
           MLDSCG L K+TDRRFGRT LAIYGP WAQK R
Sbjct: 280 MLDSCGCLEKMTDRRFGRTHLAIYGPKWAQKPR 312