Miyakogusa Predicted Gene

Lj2g3v1022600.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022600.3 tr|B9IJP9|B9IJP9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_577541 PE=4
SV=1,50.51,0.000000000000005,seg,NULL,CUFF.35985.3
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28455.1 | Symbols: CLE25 | CLAVATA3/ESR-RELATED 25 | chr3:10...    48   1e-06
AT1G69970.2 | Symbols: CLE26 | CLAVATA3/ESR-RELATED 26 | chr1:26...    48   2e-06

>AT3G28455.1 | Symbols: CLE25 | CLAVATA3/ESR-RELATED 25 |
           chr3:10670220-10670931 REVERSE LENGTH=81
          Length = 81

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 44  IWFMFLVAISVNSKTKRTVLVPINVISKHLKLVGMQRHALHSNSGMIFVSKRRVPNGPDP 103
           +    LV I  NS       VP +   K L+  G   +  H       VSKR+VPNGPDP
Sbjct: 18  LIVFLLVGILANSAPS----VPSSENVKTLRFSGKDVNLFH-------VSKRKVPNGPDP 66

Query: 104 IHNRKAVKYRQPP 116
           IHNRKA   R+PP
Sbjct: 67  IHNRKAETSRRPP 79


>AT1G69970.2 | Symbols: CLE26 | CLAVATA3/ESR-RELATED 26 |
           chr1:26353079-26354256 REVERSE LENGTH=102
          Length = 102

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 18/93 (19%)

Query: 44  IWFMFLVAISV----------------NSKTKRTVLVPINVISKHLKLVGMQRHALHSNS 87
           +WF  L  + V                + KTK  +   +N+ +   K +  +      N 
Sbjct: 11  LWFRTLFTVGVVTLLMIDAFVLQNNKEDDKTKE-ITTAVNMNNSDAKEIQQELEDGSRND 69

Query: 88  GMIFV-SKRRVPNGPDPIHNRKAVKYRQPPTQA 119
            + +V SKR+VP GPDPIHNR+A   R+PP +A
Sbjct: 70  DLSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102