Miyakogusa Predicted Gene

Lj2g3v1022540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022540.1 tr|Q9LSJ1|Q9LSJ1_ARATH At3g28420 OS=Arabidopsis
thaliana GN=At3g28420 PE=2 SV=1,36.26,0.00000000001,seg,NULL;
DUF761,Protein of unknown function DUF761, plant,CUFF.35979.1
         (176 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28420.1 | Symbols:  | Putative membrane lipoprotein | chr3:1...    52   2e-07

>AT3G28420.1 | Symbols:  | Putative membrane lipoprotein |
          chr3:10654674-10655324 REVERSE LENGTH=216
          Length = 216

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 5/56 (8%)

Query: 13 KEDCIHTILFTAGTFLLMVYLK-----SFLVEQWRAWVFLILNVILLAILFMSMRP 63
          +E+ + T L TA   L M  LK     S+L+EQWR+ VFLILNV+LLA+ F S RP
Sbjct: 10 EEENMCTSLLTAVVVLSMACLKHFSSVSYLIEQWRSLVFLILNVVLLAVYFTSTRP 65