Miyakogusa Predicted Gene
- Lj2g3v1022350.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1022350.2 Non Chatacterized Hit- tr|I0YZF3|I0YZF3_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,42.59,7e-18,seg,NULL; SIN3B-RELATED,NULL,CUFF.35987.2
(136 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15020.2 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569... 170 3e-43
AT3G01320.1 | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197 F... 164 2e-41
AT3G01320.2 | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197 F... 164 2e-41
AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569... 161 1e-40
AT1G70060.1 | Symbols: SNL4 | SIN3-like 4 | chr1:26383789-263895... 154 2e-38
AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:8... 150 3e-37
AT1G24190.2 | Symbols: SNL3 | SIN3-like 3 | chr1:8563858-8569927... 150 3e-37
AT1G59890.3 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-220506... 150 3e-37
AT1G59890.1 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-220506... 150 3e-37
AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-220506... 149 4e-37
AT1G59890.4 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-220508... 149 4e-37
AT1G10450.1 | Symbols: SNL6 | SIN3-like 6 | chr1:3432313-3437979... 146 4e-36
AT1G10250.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 72 2e-13
>AT5G15020.2 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569
REVERSE LENGTH=1355
Length = 1355
Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 2/120 (1%)
Query: 19 MPKHVSAVSFAEEMK-DSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWK-AKD 76
+ KH++A + +E K DSRVFYGNDDFY LFRLH+ILYERILSAK +EMK + KD
Sbjct: 1054 LSKHIAAAALVDEKKKDSRVFYGNDDFYVLFRLHRILYERILSAKTYCSGSEMKLRNTKD 1113
Query: 77 ASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQVCSFV 136
SPDPY+RFMNAL++LL+GS ENSKFEDECRAI GNQSYVLFTL+KLIYKL++Q+ + V
Sbjct: 1114 TCSPDPYARFMNALFSLLNGSAENSKFEDECRAIIGNQSYVLFTLEKLIYKLVKQLQAVV 1173
>AT3G01320.1 | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197
FORWARD LENGTH=1372
Length = 1372
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 93/119 (78%), Gaps = 1/119 (0%)
Query: 19 MPKHVSAVSFAEEMKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKA-KDA 77
+ KHV+AV E KD +VFYGNDDFY LFRLHQILYERIL AK N E+K K KD
Sbjct: 1081 LSKHVAAVLCDERTKDLQVFYGNDDFYVLFRLHQILYERILYAKRNCSGGELKSKNLKDT 1140
Query: 78 SSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQVCSFV 136
++ DPY+RFM LY LLDGS EN+KFEDECRAI GNQSYVLFTLDKLIY+L++Q+ + V
Sbjct: 1141 NAGDPYARFMRVLYGLLDGSAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIV 1199
>AT3G01320.2 | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197
FORWARD LENGTH=1360
Length = 1360
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 93/119 (78%), Gaps = 1/119 (0%)
Query: 19 MPKHVSAVSFAEEMKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKA-KDA 77
+ KHV+AV E KD +VFYGNDDFY LFRLHQILYERIL AK N E+K K KD
Sbjct: 1069 LSKHVAAVLCDERTKDLQVFYGNDDFYVLFRLHQILYERILYAKRNCSGGELKSKNLKDT 1128
Query: 78 SSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQVCSFV 136
++ DPY+RFM LY LLDGS EN+KFEDECRAI GNQSYVLFTLDKLIY+L++Q+ + V
Sbjct: 1129 NAGDPYARFMRVLYGLLDGSAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIV 1187
>AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569
REVERSE LENGTH=1367
Length = 1367
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/132 (62%), Positives = 99/132 (75%), Gaps = 14/132 (10%)
Query: 19 MPKHVSAVSFAEEMK-DSRVFYGNDDFYALFRLHQ------------ILYERILSAKINS 65
+ KH++A + +E K DSRVFYGNDDFY LFRLH+ ILYERILSAK
Sbjct: 1054 LSKHIAAAALVDEKKKDSRVFYGNDDFYVLFRLHRVSAIDSYDLLSHILYERILSAKTYC 1113
Query: 66 MSAEMKWK-AKDASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKL 124
+EMK + KD SPDPY+RFMNAL++LL+GS ENSKFEDECRAI GNQSYVLFTL+KL
Sbjct: 1114 SGSEMKLRNTKDTCSPDPYARFMNALFSLLNGSAENSKFEDECRAIIGNQSYVLFTLEKL 1173
Query: 125 IYKLIRQVCSFV 136
IYKL++Q+ + V
Sbjct: 1174 IYKLVKQLQAVV 1185
>AT1G70060.1 | Symbols: SNL4 | SIN3-like 4 | chr1:26383789-26389568
FORWARD LENGTH=1326
Length = 1326
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 33 KDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAKDASSP-DPYSRFMNALY 91
K+S+VFYGND FY LFRLHQILY+RILSAKINS S + KWK + ++P D Y+R M+ALY
Sbjct: 1034 KNSQVFYGNDSFYVLFRLHQILYDRILSAKINSSSPDRKWKTSNPTNPADSYARIMDALY 1093
Query: 92 NLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
NLLDG+ +NSKFED+CRAI G QSYVLFTLDKLIYKLI+ +
Sbjct: 1094 NLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLIKHL 1134
>AT1G24190.1 | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 |
chr1:8563858-8569927 REVERSE LENGTH=1330
Length = 1330
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
Query: 32 MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAKDASSP-DPYSRFMNAL 90
+K+S+VFYGND FY LFRLH+ILYERILSAK+NS S E KW+ + +P D Y+RFM AL
Sbjct: 1047 LKNSQVFYGNDSFYVLFRLHRILYERILSAKVNSSSPEGKWRTSNTKNPTDSYARFMTAL 1106
Query: 91 YNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
YNLLDG+ +N+KFED+CRAI G QSY+LFTLDKLI+K I+ +
Sbjct: 1107 YNLLDGTSDNAKFEDDCRAIIGTQSYILFTLDKLIHKFIKHL 1148
>AT1G24190.2 | Symbols: SNL3 | SIN3-like 3 | chr1:8563858-8569927
REVERSE LENGTH=1326
Length = 1326
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
Query: 32 MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAKDASSP-DPYSRFMNAL 90
+K+S+VFYGND FY LFRLH+ILYERILSAK+NS S E KW+ + +P D Y+RFM AL
Sbjct: 1043 LKNSQVFYGNDSFYVLFRLHRILYERILSAKVNSSSPEGKWRTSNTKNPTDSYARFMTAL 1102
Query: 91 YNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
YNLLDG+ +N+KFED+CRAI G QSY+LFTLDKLI+K I+ +
Sbjct: 1103 YNLLDGTSDNAKFEDDCRAIIGTQSYILFTLDKLIHKFIKHL 1144
>AT1G59890.3 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-22050670
FORWARD LENGTH=1158
Length = 1158
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 6/117 (5%)
Query: 19 MPKHVSAVSFAEE---MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAK 75
+ KHV A E DSRVFYGND Y LFRLHQ+LYERI SAKI+S E KWKA
Sbjct: 845 LAKHVPGTLQASECDTRNDSRVFYGNDSLYVLFRLHQMLYERIQSAKIHS---ERKWKAP 901
Query: 76 DASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
D++S D Y+RFM ALYNLLDGS +N+KFEDECRAI G QSYVLFTLDKL+ K ++ +
Sbjct: 902 DSTSTDSYTRFMEALYNLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLVQKFVKHL 958
>AT1G59890.1 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-22050670
FORWARD LENGTH=1162
Length = 1162
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 6/117 (5%)
Query: 19 MPKHVSAVSFAEE---MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAK 75
+ KHV A E DSRVFYGND Y LFRLHQ+LYERI SAKI+S E KWKA
Sbjct: 849 LAKHVPGTLQASECDTRNDSRVFYGNDSLYVLFRLHQMLYERIQSAKIHS---ERKWKAP 905
Query: 76 DASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
D++S D Y+RFM ALYNLLDGS +N+KFEDECRAI G QSYVLFTLDKL+ K ++ +
Sbjct: 906 DSTSTDSYTRFMEALYNLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLVQKFVKHL 962
>AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-22050670
FORWARD LENGTH=1167
Length = 1167
Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 6/117 (5%)
Query: 19 MPKHVSAVSFAEE---MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAK 75
+ KHV A E DSRVFYGND Y LFRLHQ+LYERI SAKI+S E KWKA
Sbjct: 854 LAKHVPGTLQASECDTRNDSRVFYGNDSLYVLFRLHQMLYERIQSAKIHS---ERKWKAP 910
Query: 76 DASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
D++S D Y+RFM ALYNLLDGS +N+KFEDECRAI G QSYVLFTLDKL+ K ++ +
Sbjct: 911 DSTSTDSYTRFMEALYNLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLVQKFVKHL 967
>AT1G59890.4 | Symbols: SNL5 | SIN3-like 5 | chr1:22044326-22050812
FORWARD LENGTH=1152
Length = 1152
Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 87/117 (74%), Gaps = 6/117 (5%)
Query: 19 MPKHVSAVSFAEE---MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAK 75
+ KHV A E DSRVFYGND Y LFRLHQ+LYERI SAKI+S E KWKA
Sbjct: 849 LAKHVPGTLQASECDTRNDSRVFYGNDSLYVLFRLHQMLYERIQSAKIHS---ERKWKAP 905
Query: 76 DASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
D++S D Y+RFM ALYNLLDGS +N+KFEDECRAI G QSYVLFTLDKL+ K ++ +
Sbjct: 906 DSTSTDSYTRFMEALYNLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLVQKFVKHL 962
>AT1G10450.1 | Symbols: SNL6 | SIN3-like 6 | chr1:3432313-3437979
FORWARD LENGTH=1122
Length = 1122
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 89/117 (76%), Gaps = 6/117 (5%)
Query: 21 KHVSAVSFAEE---MKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAKDA 77
KH+S A E DS+VFYGND +Y LFRLHQ+LYERI +AK +S E KWKA D
Sbjct: 822 KHLSWPLQASETCSQNDSQVFYGNDSYYVLFRLHQMLYERIQTAKKHS---EKKWKAADN 878
Query: 78 SSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQVCS 134
++PD Y RFM+ALYNLLDGS++N+KFEDECRAI G QSYVLFTLDKL+ K ++ + S
Sbjct: 879 TTPDSYPRFMDALYNLLDGSIDNTKFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHS 935
>AT1G10250.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SIN3-like 6 (TAIR:AT1G10450.1); Has 310 Blast hits
to 310 proteins in 86 species: Archae - 0; Bacteria - 0;
Metazoa - 174; Fungi - 23; Plants - 97; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink). |
chr1:3360137-3360462 REVERSE LENGTH=77
Length = 77
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Query: 87 MNALYNLLDGSVE-NSKFEDECRAITGNQSYVLFTLDKLIYKLIRQV 132
M+ALYNLLDGS++ N+KFEDECRAI G QSYVLFTLDKL+ K ++ +
Sbjct: 1 MDALYNLLDGSIDDNTKFEDECRAIFGAQSYVLFTLDKLVQKFVKHL 47