Miyakogusa Predicted Gene
- Lj2g3v1022340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1022340.1 tr|G7JNT4|G7JNT4_MEDTR Aldehyde dehydrogenase
OS=Medicago truncatula GN=MTR_4g106620 PE=4 SV=1,68.25,2e-18,SUBFAMILY
NOT NAMED,NULL; CCR4-NOT TRANSCRIPTION COMPLEX RELATED,NULL;
ZF_RING_2,Zinc finger, RING-t,CUFF.35969.1
(322 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48070.1 | Symbols: | RING/U-box superfamily protein | chr3:... 144 6e-35
AT3G48070.2 | Symbols: | RING/U-box superfamily protein | chr3:... 144 7e-35
AT5G62910.1 | Symbols: | RING/U-box superfamily protein | chr5:... 129 2e-30
AT1G74870.1 | Symbols: | RING/U-box superfamily protein | chr1:... 76 3e-14
AT2G28540.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT2G28540.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT5G60170.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 56 4e-08
>AT3G48070.1 | Symbols: | RING/U-box superfamily protein |
chr3:17750878-17751978 FORWARD LENGTH=319
Length = 319
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 153/289 (52%), Gaps = 22/289 (7%)
Query: 11 LSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCNVDSNGRMDNCPSSKHTASE--ENRSS 68
KKKRTN SAKLKQ KL +RREQWLS+V + + G + S++ SE + R
Sbjct: 20 FGKKKRTNRSAKLKQSKLGLRREQWLSQVA----MINKGDKEEMESNRRIGSEKPDQRDL 75
Query: 69 CKEMTRKGEDIEGTCIQDSDSRSTINSPDRSTYSHXXXXXXXXXXXXXXXXXXXXXXXXX 128
+ + ED GT +S S NSP+
Sbjct: 76 PRPVENLDEDNNGTHRHESFIESLSNSPNSILSGMNSIPNFSSSSSSGSGGSCSGNITEE 135
Query: 129 XXXXXXGCLDDWEAVADALYANDKSHSVVS--ESPAEHEAECRYTVLEDDKNPRVDFSKA 186
GCLDDWEA+ADAL A+D+ H + ES EHE + + + L + + +KA
Sbjct: 136 EDADDDGCLDDWEAIADALAADDEKHEKENPPESCQEHE-DIKQSALIGGADVVLRDAKA 194
Query: 187 DFKSEVPESKPNRRAWKPDDTLRPRCLPNLSKQRNSPLNSNWRGSRKTVPWAWQTIISQP 246
D S+ + K N+ AW+PDD LRP+ LPNL KQR+ P+ + + ++ P
Sbjct: 195 D--SQRRKQKSNQ-AWRPDDKLRPQGLPNLEKQRSFPV----------MNLHFSSVTVVP 241
Query: 247 SQCPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILEADARCPSCRKLYD 295
S CPICYEDLD+TDS+FLPC CGF LCLFCHK I + D RCP CRK Y+
Sbjct: 242 SSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYE 290
>AT3G48070.2 | Symbols: | RING/U-box superfamily protein |
chr3:17750878-17752297 FORWARD LENGTH=350
Length = 350
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 153/289 (52%), Gaps = 22/289 (7%)
Query: 11 LSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCNVDSNGRMDNCPSSKHTASE--ENRSS 68
KKKRTN SAKLKQ KL +RREQWLS+V + + G + S++ SE + R
Sbjct: 20 FGKKKRTNRSAKLKQSKLGLRREQWLSQVA----MINKGDKEEMESNRRIGSEKPDQRDL 75
Query: 69 CKEMTRKGEDIEGTCIQDSDSRSTINSPDRSTYSHXXXXXXXXXXXXXXXXXXXXXXXXX 128
+ + ED GT +S S NSP+
Sbjct: 76 PRPVENLDEDNNGTHRHESFIESLSNSPNSILSGMNSIPNFSSSSSSGSGGSCSGNITEE 135
Query: 129 XXXXXXGCLDDWEAVADALYANDKSHSVVS--ESPAEHEAECRYTVLEDDKNPRVDFSKA 186
GCLDDWEA+ADAL A+D+ H + ES EHE + + + L + + +KA
Sbjct: 136 EDADDDGCLDDWEAIADALAADDEKHEKENPPESCQEHE-DIKQSALIGGADVVLRDAKA 194
Query: 187 DFKSEVPESKPNRRAWKPDDTLRPRCLPNLSKQRNSPLNSNWRGSRKTVPWAWQTIISQP 246
D S+ + K N+ AW+PDD LRP+ LPNL KQR+ P+ + + ++ P
Sbjct: 195 D--SQRRKQKSNQ-AWRPDDKLRPQGLPNLEKQRSFPV----------MNLHFSSVTVVP 241
Query: 247 SQCPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILEADARCPSCRKLYD 295
S CPICYEDLD+TDS+FLPC CGF LCLFCHK I + D RCP CRK Y+
Sbjct: 242 SSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYE 290
>AT5G62910.1 | Symbols: | RING/U-box superfamily protein |
chr5:25250830-25252015 FORWARD LENGTH=327
Length = 327
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 141/298 (47%), Gaps = 34/298 (11%)
Query: 13 KKKRTNGSAKLKQIKLDVRREQWLSRVKKGCNVDSNGRMDNCPSSKHTASEENRSSCKEM 72
KKKR N SAK+KQ KL +RREQWLS+V SN + S + + SS K
Sbjct: 20 KKKRNNKSAKMKQNKLGLRREQWLSQV-----AVSNKEVKEERSVNRSQKPHHESSDK-- 72
Query: 73 TRKGEDIEG---TCIQDSDSRSTINSPDRSTYSHXXXXXXXXXXXXXXXX--XXXXXXXX 127
R+ ED G +S S NS TYS
Sbjct: 73 VRREEDNNGGNNLLHHESFMESPSNSSVGGTYSSTNFSGRSSRSSSSSSGFCSGNITEEE 132
Query: 128 XXXXXXXGCLDDWEAVADALYANDKSH-------SVVSESPAEHEAE--CRYTVLEDDKN 178
GC+DDWEAVADAL A ++ SV + A C ++ +
Sbjct: 133 NVDDDDDGCVDDWEAVADALAAEEEIEKKSRPLESVKEQVSVGQSASNVCDSSISDASDV 192
Query: 179 PRVDFSKADFKSEVPESKPNRRAWKPDDTLRPRCLPNLSKQRNSP-LNSNWRGSRKTVPW 237
V+ K + + + RAW+ DD LRP+ LPNL+KQ + P L+ +
Sbjct: 193 VGVEDPKQECLRVSSRKQTSNRAWRLDDDLRPQGLPNLAKQLSFPELDKRF--------- 243
Query: 238 AWQTIISQPSQCPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILEADARCPSCRKLYD 295
+ ++ PS CPICYEDLD+TDS+FLPC CGF LCLFCHK I + D RCP CRK Y+
Sbjct: 244 ---SSVAIPSSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYE 298
>AT1G74870.1 | Symbols: | RING/U-box superfamily protein |
chr1:28127093-28128275 FORWARD LENGTH=289
Length = 289
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 248 QCPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILEADARCPSCRKLYDHV---DGNVGL 303
+CPIC E +D TD F PC+CGF +CLFCH KI E +ARCP+CRK Y G VG
Sbjct: 211 ECPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYKKTSKKSGEVGY 269
>AT2G28540.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr2:12218652-12223594 FORWARD LENGTH=960
Length = 960
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILE------ADARCPSCRKLYDHVDGNVG 302
CP+C E++D+TD PC CG+ +C++C I+E + RCP+CR YD + VG
Sbjct: 9 CPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRYDK-EKIVG 67
Query: 303 LNI 305
+ +
Sbjct: 68 MTV 70
>AT2G28540.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr2:12218652-12223446 FORWARD LENGTH=882
Length = 882
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILE------ADARCPSCRKLYDHVDGNVG 302
CP+C E++D+TD PC CG+ +C++C I+E + RCP+CR YD + VG
Sbjct: 9 CPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRYDK-EKIVG 67
Query: 303 LNI 305
+ +
Sbjct: 68 MTV 70
>AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:16748751-16753190 REVERSE LENGTH=989
Length = 989
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
CP+C E++D+TD PC CG+ +C++C I+ +++ RCP+CR YD
Sbjct: 9 CPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYD 61
>AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:24228178-24232394 FORWARD LENGTH=987
Length = 987
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
CP+C E++D+TD PC CG+ +C++C I+ + + RCP+CR YD
Sbjct: 9 CPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYD 61
>AT5G60170.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:24228178-24232394 FORWARD LENGTH=985
Length = 985
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
CP+C E++D+TD PC CG+ +C++C I+ + + RCP+CR YD
Sbjct: 9 CPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYD 61