Miyakogusa Predicted Gene
- Lj2g3v1022320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1022320.1 Non Chatacterized Hit- tr|K3YU08|K3YU08_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si017754,26.57,3e-18,seg,NULL; coiled-coil,NULL; DUF760,Protein of
unknown function DUF760,CUFF.35971.1
(360 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14970.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 348 3e-96
AT2G14910.1 | Symbols: | unknown protein; LOCATED IN: chloropla... 191 6e-49
AT2G14910.2 | Symbols: | unknown protein; LOCATED IN: chloropla... 160 1e-39
AT1G63610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 83 3e-16
AT1G63610.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 83 3e-16
>AT5G14970.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G14910.1); Has 579 Blast hits to 397 proteins
in 95 species: Archae - 0; Bacteria - 294; Metazoa - 0;
Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes -
199 (source: NCBI BLink). | chr5:4847368-4848760 FORWARD
LENGTH=355
Length = 355
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 233/308 (75%), Gaps = 29/308 (9%)
Query: 62 TRKSTFDRGFTVIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPSDHFSVTV 121
TR+S DRGF VIAN++ RI+PLD SVISKG+SD+A+DSMKQTIS+MLGLLPSD FSV+V
Sbjct: 68 TRRSKLDRGFAVIANLVNRIQPLDTSVISKGLSDSAKDSMKQTISSMLGLLPSDQFSVSV 127
Query: 122 TVSKHPLHRLLVSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEILEVKGGG 181
T+S+ PL+RLL+SSIITGYTLWNAEYR+SL RN DI P R + E +S V+ G
Sbjct: 128 TISEQPLYRLLISSIITGYTLWNAEYRVSLRRNFDI--PIDPRKEE-EDQSSKDNVRFGS 184
Query: 182 EDGGEIEVASDLGLKDLENCSS-----SPRVFGDLPPQALNYIQQLQSELTNVKEELNAR 236
E G ++ DLG NC SP+VFGDL P+AL+YIQ LQSEL+++KEEL+++
Sbjct: 185 EKG----MSEDLG-----NCVEEFERLSPQVFGDLSPEALSYIQLLQSELSSMKEELDSQ 235
Query: 237 KQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNILSRFFVDDA 296
K++ +++E ++G RN+LL+YLRSLDPEMVTELS+ SS EVE+I++QLVQN+L R F D
Sbjct: 236 KKKALRIECEKGNRNDLLDYLRSLDPEMVTELSQLSSPEVEEIVNQLVQNVLERLFEDQT 295
Query: 297 SGSFME----QSVEGNIDNHPDNGDEFSDTVGTSRDYLAKLLFWCMLLGHHLRGLENRLQ 352
+ +FM+ ++ EG GD V TSRDYLAKLLFWCMLLGHHLRGLENRL
Sbjct: 296 TSNFMQNPGIRTTEG--------GDGTGRKVDTSRDYLAKLLFWCMLLGHHLRGLENRLH 347
Query: 353 LSCVVGLL 360
LSCVVGLL
Sbjct: 348 LSCVVGLL 355
>AT2G14910.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G14970.1); Has 605 Blast
hits to 425 proteins in 102 species: Archae - 0;
Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89;
Viruses - 0; Other Eukaryotes - 191 (source: NCBI
BLink). | chr2:6406957-6409015 REVERSE LENGTH=386
Length = 386
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 180/300 (60%), Gaps = 17/300 (5%)
Query: 73 VIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPSDHFSVTVTVSKHPLHRLL 132
V++++++ IEPLD S+I K V D+MK+TIS MLGLLPSD F V + PL +LL
Sbjct: 80 VLSDLIQEIEPLDVSLIQKDVPVTTLDAMKRTISGMLGLLPSDRFQVHIESLWEPLSKLL 139
Query: 133 VSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEILEVKGGGEDGGEIEVASD 192
VSS++TGYTL NAEYR+ L +NLD++ G DS + +E +++G D + D
Sbjct: 140 VSSMMTGYTLRNAEYRLFLEKNLDMSG--GGLDSHASENTEY-DMEGTFPDEDHVSSKRD 196
Query: 193 LGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELNA--RKQEMMQLEYDRG-I 249
++L G + +A YI +LQS+L++VK+EL RK +Q++ G
Sbjct: 197 SRTQNLSETIDE-EGLGRVSSEAQEYILRLQSQLSSVKKELQEMRRKNAALQMQQFVGEE 255
Query: 250 RNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNIL--------SRFFVDDA--SGS 299
+N+LL+YLRSL PE V ELS P++ EV++ IH +V +L S+F + + +
Sbjct: 256 KNDLLDYLRSLQPEKVAELSEPAAPEVKETIHSVVHGLLATLSPKMHSKFPASEVPPTET 315
Query: 300 FMEQSVEGNIDNHPDNGDEFSDTVGTSRDYLAKLLFWCMLLGHHLRGLENRLQLSCVVGL 359
+S E + + +F + +RDYLA+LLFWCMLLGH+LRGLE R++L V+ L
Sbjct: 316 VKAKSDEDCAELVENTSLQFQPLISLTRDYLARLLFWCMLLGHYLRGLEYRMELMEVLSL 375
>AT2G14910.2 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G14970.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:6407195-6409015 REVERSE LENGTH=366
Length = 366
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 23/280 (8%)
Query: 73 VIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPSDHFSVTVTVSKHPLHRLL 132
V++++++ IEPLD S+I K V D+MK+TIS MLGLLPSD F V + PL +LL
Sbjct: 80 VLSDLIQEIEPLDVSLIQKDVPVTTLDAMKRTISGMLGLLPSDRFQVHIESLWEPLSKLL 139
Query: 133 VSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEILEVKGGGEDGGEIEVASD 192
VSS++TGYTL NAEYR+ L +NLD++ G DS + +E +++G D + D
Sbjct: 140 VSSMMTGYTLRNAEYRLFLEKNLDMSG--GGLDSHASENTEY-DMEGTFPDEDHVSSKRD 196
Query: 193 LGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELNA--RKQEMMQLEYDRG-I 249
++L G + +A YI +LQS+L++VK+EL RK +Q++ G
Sbjct: 197 SRTQNLSETIDE-EGLGRVSSEAQEYILRLQSQLSSVKKELQEMRRKNAALQMQQFVGEE 255
Query: 250 RNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNIL--------SRFFVDDASGSFM 301
+N+LL+YLRSL PE V ELS P++ EV++ IH +V +L S+F + +
Sbjct: 256 KNDLLDYLRSLQPEKVAELSEPAAPEVKETIHSVVHGLLATLSPKMHSKFPASEVPPT-- 313
Query: 302 EQSVEGNIDNH-----PDNGDEFSDTVGTSRDYLAKLLFW 336
++V+ D + +F + +RDYLA+LLFW
Sbjct: 314 -ETVKAKSDEDCAELVENTSLQFQPLISLTRDYLARLLFW 352
>AT1G63610.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast
hits to 411 proteins in 100 species: Archae - 0;
Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94;
Viruses - 0; Other Eukaryotes - 212 (source: NCBI
BLink). | chr1:23583675-23585599 REVERSE LENGTH=340
Length = 340
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 53/289 (18%)
Query: 73 VIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPSDHFSVTVTVSKHPLHRLL 132
++ ++ ++P + K ++M+QT++ M+G LP F+VTVT L +L+
Sbjct: 88 ILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQTVTNMIGTLPPQFFAVTVTSVAENLAQLM 147
Query: 133 VSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEILEVKGGGED---GGEIEV 189
+S ++TGY NA+YR+ L ++L+ + RD KGG ED G + V
Sbjct: 148 MSVLMTGYMFRNAQYRLELQQSLEQVALPEPRDQ-----------KGGDEDYAPGTQKNV 196
Query: 190 ASDLGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELNARKQEMMQLEYDRGI 249
+ + + N S ++ A YI+ L++E+ + ++ RK Q
Sbjct: 197 SGE--VIRWNNVSGPEKI------DAKKYIELLEAEIEELNRQV-GRKSANQQ------- 240
Query: 250 RNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNILSRFFVDDASGSFMEQSVEGNI 309
N +LEYL+SL+P+ + EL+ + +V ++ V+ +L+ V D + ++ N+
Sbjct: 241 -NEILEYLKSLEPQNLKELTSTAGEDVAVAMNTFVKRLLA---VSDPN------QMKTNV 290
Query: 310 DNHPDNGDEFSDTVGTSRDYLAKLLFWCMLLGHHLRGLENRLQLSCVVG 358
TS LAKLL+W M++G+ +R +E R + V+G
Sbjct: 291 TE-------------TSAADLAKLLYWLMVVGYSIRNIEVRFDMERVLG 326
>AT1G63610.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G14910.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:23583675-23585599 REVERSE LENGTH=341
Length = 341
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 53/289 (18%)
Query: 73 VIANMLRRIEPLDNSVISKGVSDAARDSMKQTISTMLGLLPSDHFSVTVTVSKHPLHRLL 132
++ ++ ++P + K ++M+QT++ M+G LP F+VTVT L +L+
Sbjct: 89 ILLEYVQNVKPEFMEMFVKRAPKHVVEAMRQTVTNMIGTLPPQFFAVTVTSVAENLAQLM 148
Query: 133 VSSIITGYTLWNAEYRMSLTRNLDIASPCGARDSDCEKRSEILEVKGGGED---GGEIEV 189
+S ++TGY NA+YR+ L ++L+ + RD KGG ED G + V
Sbjct: 149 MSVLMTGYMFRNAQYRLELQQSLEQVALPEPRDQ-----------KGGDEDYAPGTQKNV 197
Query: 190 ASDLGLKDLENCSSSPRVFGDLPPQALNYIQQLQSELTNVKEELNARKQEMMQLEYDRGI 249
+ + + N S ++ A YI+ L++E+ + ++ RK Q
Sbjct: 198 SGE--VIRWNNVSGPEKI------DAKKYIELLEAEIEELNRQV-GRKSANQQ------- 241
Query: 250 RNNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNILSRFFVDDASGSFMEQSVEGNI 309
N +LEYL+SL+P+ + EL+ + +V ++ V+ +L+ V D + ++ N+
Sbjct: 242 -NEILEYLKSLEPQNLKELTSTAGEDVAVAMNTFVKRLLA---VSDPN------QMKTNV 291
Query: 310 DNHPDNGDEFSDTVGTSRDYLAKLLFWCMLLGHHLRGLENRLQLSCVVG 358
TS LAKLL+W M++G+ +R +E R + V+G
Sbjct: 292 TE-------------TSAADLAKLLYWLMVVGYSIRNIEVRFDMERVLG 327