Miyakogusa Predicted Gene

Lj2g3v1020050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1020050.1 tr|Q4S7G7|Q4S7G7_TETNG DNA-directed RNA
polymerase (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG000,65.71,2e-19,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; no description,NULL; RNA_pol_Rpb2,CUFF.35947.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:...   140   2e-34
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA p...    60   3e-10

>AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 |
           chr5:18247416-18257713 REVERSE LENGTH=1161
          Length = 1161

 Score =  140 bits (354), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/81 (76%), Positives = 69/81 (85%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           MLC CDTPEGE+CGLVKNLALMTHVTT+EEE PL+++CY LGV D+EVLS EELH PDSF
Sbjct: 489 MLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSF 548

Query: 61  LVIFYGLILGKHTEPQKFEAS 81
           LVI  GLILGKH+ PQ F  S
Sbjct: 549 LVILNGLILGKHSRPQYFANS 569


>AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA
           polymerase family protein | chr4:11535684-11542200
           REVERSE LENGTH=1188
          Length = 1188

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           M+C  +TPEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P + 
Sbjct: 512 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVI--PQAT 569

Query: 61  LVIFYGLILGKHTEP 75
            +   G+ +G H +P
Sbjct: 570 KIFVNGMWVGVHRDP 584