Miyakogusa Predicted Gene

Lj2g3v1019950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019950.1 tr|G7JNV6|G7JNV6_MEDTR Gonadotropin beta chain
OS=Medicago truncatula GN=MTR_4g106860 PE=4
SV=1,73.77,7e-19,GASA,Gibberellin regulated protein;
seg,NULL,CUFF.35951.1
         (298 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14920.1 | Symbols:  | Gibberellin-regulated family protein |...   105   5e-23
AT1G75750.1 | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28...    73   2e-13
AT1G75750.2 | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28...    73   3e-13
AT2G18420.1 | Symbols:  | Gibberellin-regulated family protein |...    71   9e-13
AT1G22690.3 | Symbols:  | Gibberellin-regulated family protein |...    70   2e-12
AT1G22690.2 | Symbols:  | Gibberellin-regulated family protein |...    70   2e-12
AT1G22690.1 | Symbols:  | Gibberellin-regulated family protein |...    70   2e-12
AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 | chr4:60...    65   6e-11
AT5G59845.1 | Symbols:  | Gibberellin-regulated family protein |...    53   2e-07
AT2G14900.1 | Symbols:  | Gibberellin-regulated family protein |...    52   6e-07
AT2G39540.1 | Symbols:  | Gibberellin-regulated family protein |...    51   1e-06
AT1G10588.1 | Symbols:  | Gibberellin-regulated family protein |...    49   4e-06
AT1G10588.2 | Symbols:  | Gibberellin-regulated family protein |...    49   5e-06

>AT5G14920.1 | Symbols:  | Gibberellin-regulated family protein |
           chr5:4826598-4827761 FORWARD LENGTH=275
          Length = 275

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 49/61 (80%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           DC+PLC  RC  HSRKN+C RAC+TCC RCKCVPPGTYGN+EKCG CY +M T G K KC
Sbjct: 215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274

Query: 298 P 298
           P
Sbjct: 275 P 275


>AT1G75750.1 | Symbols: GASA1 | GAST1 protein homolog 1 |
           chr1:28441813-28442284 REVERSE LENGTH=98
          Length = 98

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           DC   C  RC+L  R  +C RAC TCC RC CVPPGTYGN +KC +CY  + THG + KC
Sbjct: 39  DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKC 97

Query: 298 P 298
           P
Sbjct: 98  P 98


>AT1G75750.2 | Symbols: GASA1 | GAST1 protein homolog 1 |
           chr1:28441813-28442284 REVERSE LENGTH=97
          Length = 97

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           DC   C  RC+L  R  +C RAC TCC RC CVPPGTYGN +KC +CY  + THG + KC
Sbjct: 38  DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKC 96

Query: 298 P 298
           P
Sbjct: 97  P 97


>AT2G18420.1 | Symbols:  | Gibberellin-regulated family protein |
           chr2:7993861-7994334 FORWARD LENGTH=94
          Length = 94

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           DC   C  RC L SR N+C RAC TCC RC CV PGT GN +KC  CY  + THG + KC
Sbjct: 35  DCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKC-PCYGSLTTHGGRRKC 93

Query: 298 P 298
           P
Sbjct: 94  P 94


>AT1G22690.3 | Symbols:  | Gibberellin-regulated family protein |
           chr1:8027328-8027961 FORWARD LENGTH=119
          Length = 119

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           +C   C  RC   SRK +C RAC +CC +C+CVPPGT GN   C  CY  + THGNK KC
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGNKLKC 118

Query: 298 P 298
           P
Sbjct: 119 P 119


>AT1G22690.2 | Symbols:  | Gibberellin-regulated family protein |
           chr1:8027328-8027961 FORWARD LENGTH=119
          Length = 119

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           +C   C  RC   SRK +C RAC +CC +C+CVPPGT GN   C  CY  + THGNK KC
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGNKLKC 118

Query: 298 P 298
           P
Sbjct: 119 P 119


>AT1G22690.1 | Symbols:  | Gibberellin-regulated family protein |
           chr1:8027328-8027961 FORWARD LENGTH=119
          Length = 119

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           +C   C  RC   SRK +C RAC +CC +C+CVPPGT GN   C  CY  + THGNK KC
Sbjct: 60  NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGNKLKC 118

Query: 298 P 298
           P
Sbjct: 119 P 119


>AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 |
           chr4:6073014-6073516 REVERSE LENGTH=99
          Length = 99

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 238 DCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           DC   C  RC   SR N+C RAC +CC RC CVPPGT GN   C  CY  + T G + KC
Sbjct: 40  DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKC 98

Query: 298 P 298
           P
Sbjct: 99  P 99


>AT5G59845.1 | Symbols:  | Gibberellin-regulated family protein |
           chr5:24111443-24111808 FORWARD LENGTH=89
          Length = 89

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 239 CIPLCNYRCQLHSRKNMCTRACMTCCDRCK-CVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           C   CN RC    R++ C + C  CC++C  CVP GTYGN+++C  CY DM       KC
Sbjct: 30  CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDEC-PCYRDMKNSKGTSKC 88

Query: 298 P 298
           P
Sbjct: 89  P 89


>AT2G14900.1 | Symbols:  | Gibberellin-regulated family protein |
           chr2:6404210-6405043 FORWARD LENGTH=108
          Length = 108

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 237 KDCIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYK 296
           K C   C  RC+    K+ C + C  CC  C+CVP GTYGN+ +C  CY D L+     K
Sbjct: 48  KWCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECA-CYRDKLSSKGTPK 106

Query: 297 CP 298
           CP
Sbjct: 107 CP 108


>AT2G39540.1 | Symbols:  | Gibberellin-regulated family protein |
           chr2:16500866-16501241 FORWARD LENGTH=87
          Length = 87

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 239 CIPLCNYRCQLHSRKNMCTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKCP 298
           C   CN RC    +   C + C  CC +C CVP GT+G++++C  CY DM       KCP
Sbjct: 29  CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDEC-PCYRDMKNSKGGSKCP 87


>AT1G10588.1 | Symbols:  | Gibberellin-regulated family protein |
           chr1:3501276-3501655 FORWARD LENGTH=90
          Length = 90

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 239 CIPLCNYRCQLHSRKNM-CTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           C   C+ RC    R +  C   C  CC +C CVP GTYGN+++C  CY DM       KC
Sbjct: 31  CGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDEC-PCYRDMKNSKGGSKC 89

Query: 298 P 298
           P
Sbjct: 90  P 90


>AT1G10588.2 | Symbols:  | Gibberellin-regulated family protein |
           chr1:3501276-3501655 FORWARD LENGTH=89
          Length = 89

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 239 CIPLCNYRCQLHSRKNM-CTRACMTCCDRCKCVPPGTYGNREKCGKCYTDMLTHGNKYKC 297
           C   C+ RC    R +  C   C  CC +C CVP GTYGN+++C  CY DM       KC
Sbjct: 30  CGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDEC-PCYRDMKNSKGGSKC 88

Query: 298 P 298
           P
Sbjct: 89  P 89