Miyakogusa Predicted Gene
- Lj2g3v1019790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1019790.1 Non Chatacterized Hit- tr|I1LWD9|I1LWD9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,75.07,0,Med26,Transcription factor IIS, N-terminal; BAH,Bromo
adjacent homology (BAH) domain; no description,CUFF.35963.1
(1552 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48060.1 | Symbols: | BAH domain ;TFIIS helical bundle-like ... 612 e-175
AT3G48050.2 | Symbols: | BAH domain ;TFIIS helical bundle-like ... 332 1e-90
AT3G48050.1 | Symbols: | BAH domain ;TFIIS helical bundle-like ... 332 1e-90
AT4G11560.1 | Symbols: | bromo-adjacent homology (BAH) domain-c... 92 4e-18
AT2G25120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-c... 70 2e-11
AT4G23120.1 | Symbols: | Bromo-adjacent homology (BAH) domain-c... 64 6e-10
AT3G43990.1 | Symbols: | Bromo-adjacent homology (BAH) domain-c... 60 2e-08
AT4G24200.1 | Symbols: | Transcription elongation factor (TFIIS... 55 4e-07
>AT3G48060.1 | Symbols: | BAH domain ;TFIIS helical bundle-like
domain | chr3:17743234-17748372 REVERSE LENGTH=1611
Length = 1611
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 365/788 (46%), Positives = 495/788 (62%), Gaps = 39/788 (4%)
Query: 34 KDGRKIRVGDCALFKPPEDSPPFIGIIRKLTFDKEERPSLEVNWFYRPADLKLAKGIVLE 93
KDGRKI VGDCALFKPP+D PPFIGIIR + ++E++ L VNW YRP +LKL KGI+LE
Sbjct: 46 KDGRKISVGDCALFKPPQDCPPFIGIIRLIIAEEEDKLKLGVNWLYRPTELKLGKGILLE 105
Query: 94 AAPNEVFYSFHKDETPAASLLHPCKVAFLRQGVELPSGLSAFVCRRVYDIENNCLWWLTD 153
A PNE+FYSFH+D PAASLLHPCKVAFL +GVELPSG+S+FVCRRVYD+ N LWWLTD
Sbjct: 106 AEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGISSFVCRRVYDVTNERLWWLTD 165
Query: 154 KDHINEQQEEVEQLLDKTKLEMHGTVQSGGRSPKPLNGPTSTQPLKSGSDNVQNSSSLGV 213
+D+I+++Q EV++LL KT+ EMH T+Q GGRSPK +N PT++QP D +QN++SL
Sbjct: 166 QDYIDDRQLEVDKLLCKTRSEMHTTLQQGGRSPKSMNSPTTSQP----KDGIQNNNSLFS 221
Query: 214 XXXXXXXXXXXXXSDSSKKERLFKVEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVER 273
S+S K+ER +V+D SG R ES L SEI K T+KGGLVD EGVE+
Sbjct: 222 QSKGRKRERMDHGSESVKRERSSRVDDSGSGPLRTESGLTSEILKFTEKGGLVDSEGVEK 281
Query: 274 LVQLMQPDSTDKKLDLAGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIG 333
LVQLM P+ +KK+DL GR +L +A T+R+DCL FVQLRGLPV DEWLQEVHKGK+G
Sbjct: 282 LVQLMLPERNEKKIDLVGRAILAGFVAATNRFDCLSRFVQLRGLPVFDEWLQEVHKGKVG 341
Query: 334 DGNMPRESDKSVEEFXXXXXXXXXXXPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARGL 393
DG P++SD+ V++F PVNL+ALQTCN+GKSVNHLR+HKNSEI +KAR L
Sbjct: 342 DGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIGKKARSL 401
Query: 394 VDTWKKRVEAEMNMNDSKPSSTRTVSWPAKPTASEVPHLGSRKSGGFSE-NIAKSSVIQP 452
VDTWKKRVEAEM D+K S + VSWP + + H G R SGG +E N SS +
Sbjct: 402 VDTWKKRVEAEM---DAKSGSNQGVSWPGR-----LSH-GGRHSGGSAEANKTSSSHLHA 452
Query: 453 SVSKNSQTKLSSGEALSKSSPGSTK--PMTTSGGSNLKDQNIKVLVGSATSDLPLTPIKE 510
S S + + ++ + +SPGST+ P SGG+ KD + S++ L +K+
Sbjct: 453 SKSVSVKQQVENNLKCVATSPGSTRSAPSPGSGGNVSKDGQQRNAGAGGVSEV-LAAVKD 511
Query: 511 EKXXXXXXXXXXXXXXXXDAKAIGSC--REDAKNSTAVSMSVSKIPGSASRTRKSSNGLH 568
EK + G+ +EDA++STA S ++ K G +SR RKS+N
Sbjct: 512 EKSSSSSQSHNNSQSCSSEHAKTGNLCGKEDARSSTAGS-TLKKCSGGSSRHRKSNNVFQ 570
Query: 569 GAGVAVAQKEN--SSAKNSTRSSPSEKVSPTQASHEKSPDRSLTDQGNNQRLILRLPNTX 626
G+ + + + S + +S R+ PSEK+S + + EK+ + LT +G+ +LI++LP
Sbjct: 571 GSSSSASPRGAGLSRSFSSHRNVPSEKISQSSLTSEKTLEVPLT-EGSGNKLIVKLPR-G 628
Query: 627 XXXXXXXXXXXFEEPGVMWGKASPPADNRKM-------KAKSDCLQTNVAPNVINDACDG 679
E+P + + S P K + K+ + +V+ + ++
Sbjct: 629 RSPAQSVSGGSLEDPAPVNSRVSSPVHTVKQELCDNNWREKNHSYRADVSSVLNAESWQS 688
Query: 680 NE----KAGVDEAKGSPMV---DERCRANEDGDKVAETSKPASSSGFVSRSRQTYDASLS 732
NE G EA GSP+V DER A +D DK + K SS G +S + + +LS
Sbjct: 689 NELKDILTGSQEATGSPLVVAGDEREGALKDSDKASGNVKATSSLGNEFKSGERHGGTLS 748
Query: 733 PMNALVESCVKFSEASSSVSPGDE-GMNLLATVAAGEISRSENVSPAVSPERKSPAADES 791
MNAL+ESCV++SE ++S++ D+ GMNLLA+VAA E+S+S SP+VS S + S
Sbjct: 749 SMNALIESCVRYSETNASLAGSDDVGMNLLASVAADEMSKSPVASPSVSQPPNSLMNENS 808
Query: 792 SSRNDCKL 799
+ N+ KL
Sbjct: 809 TVGNNTKL 816
Score = 311 bits (796), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 200/489 (40%), Positives = 273/489 (55%), Gaps = 53/489 (10%)
Query: 1091 KLDFDLNEGFPAEDVGQGEIVRQEEPSTSSAVHVPCPL------PFPISSISGGFHASIT 1144
+++FDLNEGF +D G+ + S V P PL PFP++ +S G ASIT
Sbjct: 1132 RVEFDLNEGFDGDDAQHGD----SNNFSGSVVLTPTPLQPVNTLPFPVAPVSSGIPASIT 1187
Query: 1145 VASAAKGPVVLPENPLRSKVELGWKGSAATSAFRPAEPRKNAEIPSNTSDVTSVDATSV- 1203
VA+A KGP V PE+ LR K +GW+GSAATSAFRPAEPRK ++ + ++ ++ DA++
Sbjct: 1188 VAAAVKGPFVPPEDLLRYKGAVGWRGSAATSAFRPAEPRKAQDVLLSINNTSTSDASTSA 1247
Query: 1204 -KPCRPPLDFDLNVADERSFEDVAS--------------------RGSLESGPHDRSTVG 1242
K R LDFDLNV DER ED+AS R + D S+ G
Sbjct: 1248 GKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSGITNNFDQVRSGVMGSALDHSSGG 1307
Query: 1243 FDLDLNRVDETPEAGSFSMS---KLDIXXXXXXXXXXXXXXXXXXXRDFDLNNGP-GLDE 1298
LDLN+VD+ + S++M+ +LD RDFDLN+GP G D
Sbjct: 1308 --LDLNKVDDLTDMNSYTMNSSHRLD------SSFQQVKLPSTGGRRDFDLNDGPVGDDA 1359
Query: 1299 VCNEVPARSQQLKSAIPFSTAAHGPRTNSVEFGNYS-WFPQGNSYSAITVPPLLPGRGEQ 1357
+Q +S +P + G R N ++S WFP N+YSA+++PP++P RG+Q
Sbjct: 1360 AVEPSMVLNQHSRSGLPSQPSLSGIRVNGENMASFSTWFPAANAYSAVSMPPIMPERGDQ 1419
Query: 1358 SY--VAGAGSQRIIGP-TGSTPFAPEMYRGPVLSSSXXXXXXXXXXXXXXXXXFETNFPL 1414
+ +A G QR++GP TG + F+PE YRGPVLSSS F +FP+
Sbjct: 1420 PFPMIATRGPQRMLGPTTGVSSFSPEGYRGPVLSSS-PAMPFQSTTFQYPVFPFGNSFPV 1478
Query: 1415 SSNSFSGCSTAFLDSSTVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMNLP--GSTSNVMP 1472
+ +F G STA +DSS+ G FP + SQ +GPG V S YPRPY++ LP GS V+
Sbjct: 1479 TPANFPGASTAHMDSSSSGRAYFPGVNSQILGPGVPVPSNYPRPYIVGLPNGGSNGGVLD 1538
Query: 1473 DSRKWGSQSLDLNSGPGGTDAERRDDRLPSGLRQVSVPNSQALMDDQLKMFQLAGA-LKR 1531
+S KW LDLNSGPGG + E RD+ RQ+S S +DQ +M+Q++G LKR
Sbjct: 1539 NSAKWFRSGLDLNSGPGGHETEGRDESTLVS-RQLSSSASVPSKEDQARMYQMSGGVLKR 1597
Query: 1532 KEPDGGWDG 1540
KEP+GGWDG
Sbjct: 1598 KEPEGGWDG 1606
>AT3G48050.2 | Symbols: | BAH domain ;TFIIS helical bundle-like
domain | chr3:17734270-17739412 REVERSE LENGTH=1613
Length = 1613
Score = 332 bits (851), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 207/502 (41%), Positives = 282/502 (56%), Gaps = 56/502 (11%)
Query: 1090 VKLDFDLNEGFPAEDVGQGEIVRQEEPSTSSAVHVPCPL------PFPISSISGGFHASI 1143
+++FDLNEGF +D G+ + S P PL PFP++ +S G ASI
Sbjct: 1129 ARVEFDLNEGFDGDDAKHGD----SNNFSGSVFLTPTPLQPVKTLPFPVAPVSSGTRASI 1184
Query: 1144 TVASAAKGPVVLPENPLRSKVELGWKGSAATSAFRPAEPRKNAEIPSNTSDVTSVDATSV 1203
TVA+AAKGP V PE+ LR+K +GW+GSAATSAFRPAEPRK ++ + ++ ++ DA++
Sbjct: 1185 TVAAAAKGPFVPPEDLLRNKGAVGWRGSAATSAFRPAEPRKPQDVLLSINNTSTSDASTS 1244
Query: 1204 --KPCRPPLDFDLNVADERSFEDVAS--------------------RGSLESGPHDRSTV 1241
K R LDFDLNV DER ED+AS R + D S+
Sbjct: 1245 AGKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSDITNSFDQVRSGVMGSALDHSSG 1304
Query: 1242 GFDLDLNRVDETPEAGSFSMS---KLDIXXXXXXXXXXXXXXXXXXXRDFDLNNGP-GLD 1297
G DLDLN+VD++ + S++M+ +LD RDFDLN+GP G D
Sbjct: 1305 GLDLDLNKVDDSTDMISYTMNSSHRLD------SSFQQVKLPSTGGRRDFDLNDGPVGDD 1358
Query: 1298 EVCNEVPARSQQLKSAIPFSTAAHGPRTNSVEFGNYS-WFPQGNSYSAITVPPLLPGRGE 1356
+Q +S +P + G R N ++S WFP N+YSA+++PP++P RG+
Sbjct: 1359 AAVEPSMVLNQHSRSGLPSQPSLSGIRVNGENMASFSTWFPAANAYSAVSMPPIMPERGD 1418
Query: 1357 QSY--VAGAGSQRIIGPT-GSTPFAPEMYRGPVLSSSXXXXXXXXXXXXXXXXXFETNFP 1413
Q + +A G QR++GPT G + F PE YRGPVLSSS F +FP
Sbjct: 1419 QPFPMIATRGPQRMLGPTTGVSSFTPEGYRGPVLSSSPAMPFQSTTFQYPVFP-FGNSFP 1477
Query: 1414 LSSNSFSGCSTAFLDSSTVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMNLP--GSTSNVM 1471
++S +F G STA +DSS+ G CFP + SQ +GPG V S YPRPY++ LP GS V+
Sbjct: 1478 VTSANFPGASTAHMDSSSSGRACFPGVNSQILGPGVPVPSNYPRPYIVGLPNGGSNGGVL 1537
Query: 1472 PDSRKWGSQSLDLNSGPGGTDAERRDDRLPSGLRQVSVPNSQALMDDQLKMFQLAGA-LK 1530
+ KW LDLNSGPGG + E RD+ RQ+S S L +DQ +M+Q++G LK
Sbjct: 1538 DNGAKWFRSGLDLNSGPGGHETEGRDESTLVA-RQLSSSASLPLKEDQARMYQMSGGVLK 1596
Query: 1531 RKEPDGGWDGTDRFSYKHPSWQ 1552
RKEP+GGWDG Y+ SWQ
Sbjct: 1597 RKEPEGGWDG-----YRQSSWQ 1613
>AT3G48050.1 | Symbols: | BAH domain ;TFIIS helical bundle-like
domain | chr3:17734270-17739412 REVERSE LENGTH=1613
Length = 1613
Score = 332 bits (851), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 207/502 (41%), Positives = 282/502 (56%), Gaps = 56/502 (11%)
Query: 1090 VKLDFDLNEGFPAEDVGQGEIVRQEEPSTSSAVHVPCPL------PFPISSISGGFHASI 1143
+++FDLNEGF +D G+ + S P PL PFP++ +S G ASI
Sbjct: 1129 ARVEFDLNEGFDGDDAKHGD----SNNFSGSVFLTPTPLQPVKTLPFPVAPVSSGTRASI 1184
Query: 1144 TVASAAKGPVVLPENPLRSKVELGWKGSAATSAFRPAEPRKNAEIPSNTSDVTSVDATSV 1203
TVA+AAKGP V PE+ LR+K +GW+GSAATSAFRPAEPRK ++ + ++ ++ DA++
Sbjct: 1185 TVAAAAKGPFVPPEDLLRNKGAVGWRGSAATSAFRPAEPRKPQDVLLSINNTSTSDASTS 1244
Query: 1204 --KPCRPPLDFDLNVADERSFEDVAS--------------------RGSLESGPHDRSTV 1241
K R LDFDLNV DER ED+AS R + D S+
Sbjct: 1245 AGKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSDITNSFDQVRSGVMGSALDHSSG 1304
Query: 1242 GFDLDLNRVDETPEAGSFSMS---KLDIXXXXXXXXXXXXXXXXXXXRDFDLNNGP-GLD 1297
G DLDLN+VD++ + S++M+ +LD RDFDLN+GP G D
Sbjct: 1305 GLDLDLNKVDDSTDMISYTMNSSHRLD------SSFQQVKLPSTGGRRDFDLNDGPVGDD 1358
Query: 1298 EVCNEVPARSQQLKSAIPFSTAAHGPRTNSVEFGNYS-WFPQGNSYSAITVPPLLPGRGE 1356
+Q +S +P + G R N ++S WFP N+YSA+++PP++P RG+
Sbjct: 1359 AAVEPSMVLNQHSRSGLPSQPSLSGIRVNGENMASFSTWFPAANAYSAVSMPPIMPERGD 1418
Query: 1357 QSY--VAGAGSQRIIGPT-GSTPFAPEMYRGPVLSSSXXXXXXXXXXXXXXXXXFETNFP 1413
Q + +A G QR++GPT G + F PE YRGPVLSSS F +FP
Sbjct: 1419 QPFPMIATRGPQRMLGPTTGVSSFTPEGYRGPVLSSSPAMPFQSTTFQYPVFP-FGNSFP 1477
Query: 1414 LSSNSFSGCSTAFLDSSTVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMNLP--GSTSNVM 1471
++S +F G STA +DSS+ G CFP + SQ +GPG V S YPRPY++ LP GS V+
Sbjct: 1478 VTSANFPGASTAHMDSSSSGRACFPGVNSQILGPGVPVPSNYPRPYIVGLPNGGSNGGVL 1537
Query: 1472 PDSRKWGSQSLDLNSGPGGTDAERRDDRLPSGLRQVSVPNSQALMDDQLKMFQLAGA-LK 1530
+ KW LDLNSGPGG + E RD+ RQ+S S L +DQ +M+Q++G LK
Sbjct: 1538 DNGAKWFRSGLDLNSGPGGHETEGRDESTLVA-RQLSSSASLPLKEDQARMYQMSGGVLK 1596
Query: 1531 RKEPDGGWDGTDRFSYKHPSWQ 1552
RKEP+GGWDG Y+ SWQ
Sbjct: 1597 RKEPEGGWDG-----YRQSSWQ 1613
>AT4G11560.1 | Symbols: | bromo-adjacent homology (BAH)
domain-containing protein | chr4:7000095-7003445 REVERSE
LENGTH=587
Length = 587
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 50 PED--SPPFIGIIRKLTFDKEERPSLEVNWFYRPADL-KLAKGIVLEAAPNEVFYSFHKD 106
PED P++ II+ +T K+ + WFYRP + K G + E+FYSFH+D
Sbjct: 141 PEDKSQKPYVAIIKDITQTKDGSMMILGQWFYRPEEAEKRGGGNWQSSDTRELFYSFHRD 200
Query: 107 ETPAASLLHPCKVAFLRQGVELPSGLS--AFVCRRVYDIENNCLWWLTDKDHINEQQEEV 164
E PA S++H C V F+ +LP + F+ R+VYD LW LTDKD+ + +Q E+
Sbjct: 201 EVPAESVMHRCVVYFVPAHKQLPKRKNNPGFIVRKVYDTVEKKLWKLTDKDYEDSKQREI 260
Query: 165 EQLLDKT 171
+ L+ KT
Sbjct: 261 DVLVKKT 267
>AT2G25120.1 | Symbols: | Bromo-adjacent homology (BAH)
domain-containing protein | chr2:10689934-10691569
FORWARD LENGTH=380
Length = 380
Score = 69.7 bits (169), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 50 PED--SPPFIGIIRKLTF-DKEERPSLEVNWFYRPADL-KLAKGIVLEAAPNEVFYSFHK 105
P+D S P+ II+ + +KE+ L V+WFYRP D+ K G +FYSFH+
Sbjct: 106 PDDPNSKPYCAIIKDIYIPNKEKYVKLAVHWFYRPEDVDKKHVGKWESKDSRNLFYSFHR 165
Query: 106 DETPAASLLHPCKVAFLRQGVELPSGLS--AFVCRRVYDIENNCLWWLTDKDHINEQQEE 163
DE A S+ H C V F+ + ++P+ F+ + VYD + TDK+ Q+ E
Sbjct: 166 DEVFAESVKHKCVVNFVPENKQIPNRREHPCFIVQNVYDFVKKKVRKFTDKNFDVHQKNE 225
Query: 164 VEQLLDKTKLEM 175
+++L+ KT L +
Sbjct: 226 IDRLVAKTSLRL 237
>AT4G23120.1 | Symbols: | Bromo-adjacent homology (BAH)
domain-containing protein | chr4:12113308-12115523
FORWARD LENGTH=360
Length = 360
Score = 64.3 bits (155), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 43 DCALFKPPEDSPPFIGIIRKL-TFDKEERPSLEVNWFYRPADL-KLAKGIVLEAAPNEVF 100
D L P + P++ II+ + T KE LEV W YRP ++ K G ++F
Sbjct: 63 DSVLLVPEDGEKPYVAIIKDIYTQRKEGHVKLEVQWLYRPEEVEKKYVGNWKSKGSRDLF 122
Query: 101 YSFHKDETPAASLLHPCKVAFLRQGVELPSGLS--AFVCRRVYDIENNCLWWLTDKDHIN 158
YSFH+DE A S+ C V F+++ ++P+ F+ + VYD L LT
Sbjct: 123 YSFHRDEVFAESVKDDCIVHFVQENKQIPNRRKHPGFIVQHVYDNVKKKLRKLTFNGFDL 182
Query: 159 EQQEEVEQLLDKTKLEM 175
+Q+ E++ ++KT L +
Sbjct: 183 QQKREIDHFVEKTILRI 199
>AT3G43990.1 | Symbols: | Bromo-adjacent homology (BAH)
domain-containing protein | chr3:15782538-15785178
REVERSE LENGTH=380
Length = 380
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 36 GRKIRVGDCALFKPPED-SPPFIGIIRKL-TFDKEERPSLEVNWFYRPADLKLAK-GIVL 92
G++ R+ D L P ++ +I II+ + + +K+ +EV WFYR D++ G
Sbjct: 81 GKQYRLKDFVLLYPEDNKQKEYIAIIKDIYSQEKDGLVKMEVQWFYRREDIEEKHFGKWK 140
Query: 93 EAAPNEVFYSFHKDETPAASLLHPCKVAFLRQGVELPSGL--SAFVCRRVYDIENNCLWW 150
P E+F+SFH DE A S+ + C V F+ ++P+ + S F+ + VYD +
Sbjct: 141 TENPREIFFSFHCDEVFAESVKYKCLVYFVPDDKQIPNRIHHSGFIVQMVYDNVRKKVRK 200
Query: 151 LTDKDHINEQQEEVEQLLDKT 171
+ + EQ+ E++ L+ KT
Sbjct: 201 FSHEGFEEEQKFEIDMLVAKT 221
>AT4G24200.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr4:12556927-12559929 REVERSE
LENGTH=1000
Length = 1000
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 262 KGGLVDFEGVERLVQLMQ--PDSTDKKLDLAGR--IMLVDVIALTDRYDCLGWFVQLRGL 317
K GL VE LV +MQ DS K A R + IA T DCL FV L GL
Sbjct: 13 KDGLTVTSRVEELVSVMQSNKDSVLKNSGDAFRQWTAVASTIAATKNRDCLDVFVNLDGL 72
Query: 318 PVLDEWLQEVHKGKIGDGNMPRESDKSVEEFXXXXXXXXXXXPVNLHALQTCNVGKSVNH 377
L WL E ++ D + D+SVEE V+ L + + +V
Sbjct: 73 VYLSSWLAEA---QMLDND---SVDRSVEESILALLEAVENLGVDSSKLVSSGLWVAVKK 126
Query: 378 LRTHKNSEIQRKARGLVDTWKKRVEAEMNMNDSK 411
L H +S +Q +AR L +WK + + + + +DS+
Sbjct: 127 LVDHGSSRVQDQARKLFGSWKDKDDYDHSEHDSE 160