Miyakogusa Predicted Gene

Lj2g3v1019760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019760.1 Non Chatacterized Hit- tr|G6BEC7|G6BEC7_CLODI
Putative uncharacterized protein OS=Clostridium
diffic,32.58,0.000000000000002,no description,NULL; seg,NULL;
LigT-like,RNA ligase/cyclic nucleotide phosphodiesterase;
2_5_RNA_lig,CUFF.35931.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40190.1 | Symbols:  | RNA ligase/cyclic nucleotide phosphodi...   221   2e-58
AT3G28140.1 | Symbols:  | RNA ligase/cyclic nucleotide phosphodi...   191   3e-49
AT3G28140.2 | Symbols:  | RNA ligase/cyclic nucleotide phosphodi...   145   2e-35

>AT5G40190.1 | Symbols:  | RNA ligase/cyclic nucleotide
           phosphodiesterase family protein |
           chr5:16069298-16069849 REVERSE LENGTH=183
          Length = 183

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 134/177 (75%)

Query: 2   GYAIELYMDPALENQVLKAWNVIARRQISTQLIEMESRPHITLFSTPFLEPSKLEPLLKT 61
           GYAIELY DPALENQVLKAWNV ARRQIST+LI  ESRPHITLFST F + ++LE ++K 
Sbjct: 4   GYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESVIKN 63

Query: 62  LSTKHDPFPLSFSSVGAFPGDHNXXXXXXXXXXXXXHFQSQLCDAIRKEGVDVPDEYALG 121
             +K +P  +SFS++G+F  D+N               Q+QLCD ++KE VD+ +EY + 
Sbjct: 64  FVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEYRVD 123

Query: 122 SWIPFCSVAHQVPKARMAEAFSLLRDLKLPVSGYAVDVAVVQFSPVRELFSFVLGTT 178
           SW+PFC VA  VPK+RMAEAFS+LRDLKLPV+GY +++ +V+FSPVRE+FSF LG T
Sbjct: 124 SWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180


>AT3G28140.1 | Symbols:  | RNA ligase/cyclic nucleotide
           phosphodiesterase family protein |
           chr3:10470552-10471106 FORWARD LENGTH=184
          Length = 184

 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 131/178 (73%), Gaps = 1/178 (0%)

Query: 2   GYAIELYMDPALENQVLKAWNVIARRQISTQLIEMESRPHITLFST-PFLEPSKLEPLLK 60
           GYAIELY DPALENQVLKAWNV ARRQIST LI  ESRPHITLFST   ++ +KLEP++K
Sbjct: 4   GYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEPIIK 63

Query: 61  TLSTKHDPFPLSFSSVGAFPGDHNXXXXXXXXXXXXXHFQSQLCDAIRKEGVDVPDEYAL 120
           + S+K +P  LSFSS+G+F  D N               Q QLC+ I+KEG ++ +EY +
Sbjct: 64  SFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEEYRV 123

Query: 121 GSWIPFCSVAHQVPKARMAEAFSLLRDLKLPVSGYAVDVAVVQFSPVRELFSFVLGTT 178
            SW+PFCSVA  VPK+R++E F +LRDLKL V GYA+D+ +V+FSPVRE+FSF LG  
Sbjct: 124 DSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGNN 181


>AT3G28140.2 | Symbols:  | RNA ligase/cyclic nucleotide
           phosphodiesterase family protein |
           chr3:10470552-10471295 FORWARD LENGTH=168
          Length = 168

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 102/142 (71%), Gaps = 1/142 (0%)

Query: 2   GYAIELYMDPALENQVLKAWNVIARRQISTQLIEMESRPHITLFST-PFLEPSKLEPLLK 60
           GYAIELY DPALENQVLKAWNV ARRQIST LI  ESRPHITLFST   ++ +KLEP++K
Sbjct: 4   GYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEPIIK 63

Query: 61  TLSTKHDPFPLSFSSVGAFPGDHNXXXXXXXXXXXXXHFQSQLCDAIRKEGVDVPDEYAL 120
           + S+K +P  LSFSS+G+F  D N               Q QLC+ I+KEG ++ +EY +
Sbjct: 64  SFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEEYRV 123

Query: 121 GSWIPFCSVAHQVPKARMAEAF 142
            SW+PFCSVA  VPK+R++E F
Sbjct: 124 DSWVPFCSVAVDVPKSRISEGF 145