Miyakogusa Predicted Gene
- Lj2g3v1014490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1014490.1 Non Chatacterized Hit- tr|I1LV52|I1LV52_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,58.63,0,seg,NULL;
FAMILY NOT NAMED,NULL,CUFF.35910.1
(291 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15000.1 | Symbols: | cobalt ion binding | chr3:5050321-5052... 256 1e-68
AT3G06790.2 | Symbols: | plastid developmental protein DAG, put... 167 6e-42
AT3G06790.1 | Symbols: | plastid developmental protein DAG, put... 165 3e-41
AT1G72530.1 | Symbols: | plastid developmental protein DAG, put... 148 3e-36
AT1G72530.2 | Symbols: | plastid developmental protein DAG, put... 143 2e-34
AT2G35240.1 | Symbols: | plastid developmental protein DAG, put... 137 1e-32
AT1G32580.1 | Symbols: | plastid developmental protein DAG, put... 131 5e-31
AT2G33430.1 | Symbols: DAL1, DAL | differentiation and greening-... 131 6e-31
AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST ... 130 1e-30
AT1G11430.1 | Symbols: | plastid developmental protein DAG, put... 128 4e-30
AT1G53260.2 | Symbols: | LOCATED IN: endomembrane system; BEST ... 128 5e-30
AT4G20020.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 100 2e-21
AT4G20020.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 100 2e-21
AT5G44780.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 88 8e-18
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
>AT3G15000.1 | Symbols: | cobalt ion binding | chr3:5050321-5052121
FORWARD LENGTH=395
Length = 395
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/205 (63%), Positives = 157/205 (76%), Gaps = 12/205 (5%)
Query: 1 MATKIISR---LHP-KTLTPFFSRSLSTTCPS--------LRRLRPLAAASIPTRHLFLP 48
MAT ISR P K+L+ F+RS +++ P L R RPL AA L
Sbjct: 1 MATHTISRSILCRPAKSLSFLFTRSFASSAPLAKSPASSLLSRSRPLVAAFSSVFRGGLV 60
Query: 49 SIRSLSTRATTSSHNDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSREEIIDGY 108
S++ LST+AT+SS NDPNPN SNRP KE I LDGCD EHWL+++E P+GEP+R+EIID Y
Sbjct: 61 SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRDEIIDSY 120
Query: 109 IKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVRE 168
IKTLAQ++GSE+EARMKIYSVST+ Y+AFGALVSE+LS K+KEL V WVLPDSYL+VR
Sbjct: 121 IKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRN 180
Query: 169 KDYGGEPFINGQAVPYDPKYHEEWV 193
KDYGGEPFI+G+AVPYDPKYHEEW+
Sbjct: 181 KDYGGEPFIDGKAVPYDPKYHEEWI 205
>AT3G06790.2 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144564-2145743 REVERSE LENGTH=244
Length = 244
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 102/142 (71%), Gaps = 6/142 (4%)
Query: 53 LSTRATTSSH-----NDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSREEIIDG 107
+STR TS NDP+PN SNRP KE I LDGCD EHWLI+ME + +P+ EE+I+
Sbjct: 57 ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKPTEEEMINS 116
Query: 108 YIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVR 167
Y+KTL VLG EEEA+ KIYSV T Y FGAL+SEELS K+K LP V WVLPDSYL+V
Sbjct: 117 YVKTLTSVLGCEEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVP 176
Query: 168 EKDYGGEPFINGQAVPYDPKYH 189
KDYGG+ ++ G+ +P P+Y
Sbjct: 177 NKDYGGDLYVEGKVIP-RPQYR 197
>AT3G06790.1 | Symbols: | plastid developmental protein DAG,
putative | chr3:2144564-2145743 REVERSE LENGTH=244
Length = 244
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 102/142 (71%), Gaps = 6/142 (4%)
Query: 53 LSTRATTSSH-----NDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSREEIIDG 107
+STR TS NDP+PN SNRP KE I LDGCD EHWLI+ME + +P+ EE+I+
Sbjct: 57 ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKPTEEEMINS 116
Query: 108 YIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVR 167
Y+KTL VLG +EEA+ KIYSV T Y FGAL+SEELS K+K LP V WVLPDSYL+V
Sbjct: 117 YVKTLTSVLGWQEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVP 176
Query: 168 EKDYGGEPFINGQAVPYDPKYH 189
KDYGG+ ++ G+ +P P+Y
Sbjct: 177 NKDYGGDLYVEGKVIP-RPQYR 197
>AT1G72530.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:27312999-27313937 FORWARD LENGTH=188
Length = 188
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 87/114 (76%)
Query: 80 LDGCDMEHWLIMMEKPEGEPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGA 139
++GCD +HWL++M+ P G P+R I+ +++TLA LGSEEEA+ IYSVSTK+Y+AFG
Sbjct: 49 VEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGC 108
Query: 140 LVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVPYDPKYHEEWV 193
+ E L++KI+ LP V WVLPDS++ + YGGEPF++G+ VPYD KYH +W+
Sbjct: 109 RIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVPYDEKYHADWL 162
>AT1G72530.2 | Symbols: | plastid developmental protein DAG,
putative | chr1:27312999-27313937 FORWARD LENGTH=192
Length = 192
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 87/118 (73%), Gaps = 4/118 (3%)
Query: 80 LDGCDMEHWLIMMEKPEGEPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGA 139
++GCD +HWL++M+ P G P+R I+ +++TLA LGSEEEA+ IYSVSTK+Y+AFG
Sbjct: 49 VEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGC 108
Query: 140 LVSEELSFKIKELPKVTWVLPDSYLNVREKDYG----GEPFINGQAVPYDPKYHEEWV 193
+ E L++KI+ LP V WVLPDS++ + YG GEPF++G+ VPYD KYH +W+
Sbjct: 109 RIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGVFFAGEPFVDGEVVPYDEKYHADWL 166
>AT2G35240.1 | Symbols: | plastid developmental protein DAG,
putative | chr2:14845099-14846262 REVERSE LENGTH=232
Length = 232
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 112/190 (58%), Gaps = 14/190 (7%)
Query: 17 FFSRSLSTTCPS-------LRRLRPL---AAASIPTRHLFLPSIRSLSTRATTS-SHNDP 65
FFS S + PS RR P A IP F +IR+ R+ S S
Sbjct: 17 FFSTSNAVASPSPLPSHLISRRFSPTIFHAVGYIPALTRFT-TIRTRMDRSGGSYSPLKS 75
Query: 66 NPNTSNRP-TKEAIALDGCDMEHWLIMMEKPEGE-PSREEIIDGYIKTLAQVLGSEEEAR 123
N S+RP T+ A GCD EHWLI+MEKP GE ++++ID Y++TLA+++GSEEEAR
Sbjct: 76 GSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEAR 135
Query: 124 MKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP 183
KIY+VS + YF FG + EE S K++ LP V +VLPDSY++ KDYG E F+NG+ VP
Sbjct: 136 KKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVP 195
Query: 184 YDPKYHEEWV 193
P+ V
Sbjct: 196 RPPERQRRMV 205
>AT1G32580.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:11784108-11785430 FORWARD LENGTH=229
Length = 229
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 91/128 (71%), Gaps = 2/128 (1%)
Query: 68 NTSNR-PTKEAIALDGCDMEHWLIMMEKPEGE-PSREEIIDGYIKTLAQVLGSEEEARMK 125
N S+R PT+ A GCD EHWLI+M+KP GE +++++ID Y++TLA+++GSEEEA+ K
Sbjct: 75 NFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKK 134
Query: 126 IYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVPYD 185
IY+VS + YF FG + EE S K++ LP V ++LPDSY++ KDYG E F+NG+ V
Sbjct: 135 IYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFVNGEIVQRP 194
Query: 186 PKYHEEWV 193
P+ + +
Sbjct: 195 PERQRKII 202
>AT2G33430.1 | Symbols: DAL1, DAL | differentiation and
greening-like 1 | chr2:14162732-14164729 FORWARD
LENGTH=219
Length = 219
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 3/142 (2%)
Query: 49 SIRSLSTRA-TTSSHNDPNPNTSNRP-TKEAIALDGCDMEHWLIMMEKPEGE-PSREEII 105
SIR + R+ +T S + N S+RP T+ A GCD EHWLI+M+KP GE +++++I
Sbjct: 46 SIRCGANRSGSTYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMI 105
Query: 106 DGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLN 165
D YI+TLA+V+GSEEEA+ +IY+VS + Y FG + EE S K++ LP V +VLPDSY++
Sbjct: 106 DCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVD 165
Query: 166 VREKDYGGEPFINGQAVPYDPK 187
KDYG E F+NG+ V P+
Sbjct: 166 PENKDYGAELFVNGEIVQRSPE 187
>AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST
Arabidopsis thaliana protein match is: cobalt ion
binding (TAIR:AT3G15000.1); Has 32763 Blast hits to
18534 proteins in 929 species: Archae - 22; Bacteria -
2420; Metazoa - 15140; Fungi - 5401; Plants - 5313;
Viruses - 485; Other Eukaryotes - 3982 (source: NCBI
BLink). | chr1:19859393-19860421 REVERSE LENGTH=271
Length = 271
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 124 MKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP 183
MKIYSVS K YFAFGALVSE+LS KIKELPKV WVLPDSYL+ + KDYGGEPFI+G+AVP
Sbjct: 1 MKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVP 60
Query: 184 YDPKYHEEWV 193
YDPKYHEEW+
Sbjct: 61 YDPKYHEEWI 70
>AT1G11430.1 | Symbols: | plastid developmental protein DAG,
putative | chr1:3847273-3848938 FORWARD LENGTH=232
Length = 232
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 16/158 (10%)
Query: 46 FLPSIRSLST----------RATTSSHNDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKP 95
+ P +R++ST +A T + + +++ +E I L GCD HWLI+ME P
Sbjct: 38 WTPLLRNISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFP 97
Query: 96 EG-EPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPK 154
+ PSR+++ID Y+ TLA VLGS EEA+ +Y+ ST Y F + EE S K K LP
Sbjct: 98 KDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPG 157
Query: 155 VTWVLPDSYLNVREKDYGGEPFINGQAVP-----YDPK 187
V WVLPDSY++V+ KDYGG+ +ING+ +P Y PK
Sbjct: 158 VLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPK 195
>AT1G53260.2 | Symbols: | LOCATED IN: endomembrane system; BEST
Arabidopsis thaliana protein match is: cobalt ion
binding (TAIR:AT3G15000.1); Has 246 Blast hits to 241
proteins in 32 species: Archae - 0; Bacteria - 2;
Metazoa - 7; Fungi - 16; Plants - 212; Viruses - 1;
Other Eukaryotes - 8 (source: NCBI BLink). |
chr1:19859406-19860421 REVERSE LENGTH=230
Length = 230
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 124 MKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP 183
MKIYSVS K YFAFGALVSE+LS KIKELPKV WVLPDSYL+ + KDYGGEPFI+G+AVP
Sbjct: 1 MKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVP 60
Query: 184 YDPKYHEEWV 193
YDPKYHEEW+
Sbjct: 61 YDPKYHEEWI 70
>AT4G20020.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G44780.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr4:10844360-10846085 REVERSE LENGTH=406
Length = 406
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 74 TKEAIALDGCDMEHWLIMME--KPEGEPSREEIIDGYIKTLAQVLG-SEEEARMKIYSVS 130
T++ + +GCD HWLI M+ K E S EE++ Y +T AQ LG S EEA+ ++Y+ S
Sbjct: 76 TEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACS 135
Query: 131 TKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFING 179
T Y F A+++E+ S K K+LP V ++LPDSY++ + K+YGG+ + NG
Sbjct: 136 TTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENG 184
>AT4G20020.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G44780.1); Has 28928 Blast hits to 16023
proteins in 1033 species: Archae - 4; Bacteria - 4155;
Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses -
205; Other Eukaryotes - 3072 (source: NCBI BLink). |
chr4:10844433-10846085 REVERSE LENGTH=419
Length = 419
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 74 TKEAIALDGCDMEHWLIMME--KPEGEPSREEIIDGYIKTLAQVLG-SEEEARMKIYSVS 130
T++ + +GCD HWLI M+ K E S EE++ Y +T AQ LG S EEA+ ++Y+ S
Sbjct: 76 TEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACS 135
Query: 131 TKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFING 179
T Y F A+++E+ S K K+LP V ++LPDSY++ + K+YGG+ + NG
Sbjct: 136 TTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENG 184
>AT5G44780.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G20020.2); Has 9661 Blast hits to 6233 proteins
in 635 species: Archae - 4; Bacteria - 1116; Metazoa -
4251; Fungi - 1510; Plants - 1359; Viruses - 43; Other
Eukaryotes - 1378 (source: NCBI BLink). |
chr5:18068100-18070544 FORWARD LENGTH=723
Length = 723
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 81 DGCDMEHWLIMMEKPEGE-PSREEIIDGYIKTLAQVLG-SEEEARMKIYSVSTKHYFAFG 138
+GCD HWLI M P+ PSREE+I + +T A+ L S EEA+ KIY++ T Y F
Sbjct: 78 EGCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQ 137
Query: 139 ALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP 183
A ++ K ++LP V +++PDSY++V K YGG+ + NG P
Sbjct: 138 ATMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGGDKYENGVITP 182
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 87 HWLIMMEKP-EGEPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEEL 145
+W+++++KP S+ ++D Y++ LA+VLG+E++A++ IY S +F F + E+
Sbjct: 72 YWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFCCHIDEDA 131
Query: 146 SFKIKELPKVTWVLPDSYLNVREKDYG 172
S ++ LP V + P+ + +K+YG
Sbjct: 132 SRQLASLPGVVSIRPEQDYSSEKKNYG 158
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 80 LDGCDMEHWLIMMEKP-EGEPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFG 138
D ++HW++ ++KP G ++ +++D ++ L++VL +E++A+M +Y VS + F F
Sbjct: 168 FDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQSDFGFC 227
Query: 139 ALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGE 174
+ E + ++ +P V V+PD+ KDY G+
Sbjct: 228 CDLDERSAVELAGVPGVLAVVPDNSFESLNKDYEGD 263