Miyakogusa Predicted Gene

Lj2g3v1014470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1014470.1 Non Chatacterized Hit- tr|D8SU27|D8SU27_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,58.33,5e-19,VMA21,Vacuolar ATPase assembly integral
membrane protein VMA21-like domain,CUFF.35913.1
         (104 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05780.1 | Symbols:  | Vacuolar ATPase assembly integral memb...   139   3e-34
AT2G31710.1 | Symbols:  | Vacuolar ATPase assembly integral memb...   119   4e-28

>AT1G05780.1 | Symbols:  | Vacuolar ATPase assembly integral
           membrane protein VMA21-like domain |
           chr1:1726761-1728180 FORWARD LENGTH=106
          Length = 106

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 81/102 (79%)

Query: 3   VIQKFFIASMFMWAVPIAILHAFNHNLLPGTSNLSPYSVTLVSGFLAVISVNVVIAFYIY 62
           V+ KF IASMFMW +P+AIL+ FNHNLLPG++ LSP+S+ L+SGFLAV+SVN VI FYI 
Sbjct: 4   VMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLAVVSVNTVIVFYIC 63

Query: 63  LAMREPADKHEPDPRFLAEAKASINQTSGEAQQSSQPSKKEQ 104
           +AM+EPADKH+PD  FLAEAK S+N+ +  A  S   + K+Q
Sbjct: 64  MAMKEPADKHKPDAAFLAEAKDSVNKLTKGATSSDDHALKKQ 105


>AT2G31710.1 | Symbols:  | Vacuolar ATPase assembly integral
           membrane protein VMA21-like domain |
           chr2:13482057-13482895 REVERSE LENGTH=105
          Length = 105

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 86/103 (83%), Gaps = 3/103 (2%)

Query: 3   VIQKFFIASMFMWAVPIAILHAFNHNLLPGTSNLSPYSVTLVSGFLAVISVNVVIAFYIY 62
           V+QKF IASMFMW +PIAIL+ FN++LLPG++ LSP+S+TL+SGFLAV+SVNVVI FYI 
Sbjct: 4   VMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVFYIC 63

Query: 63  LAMREPADKHEPDPRFLAEAKASINQ-TSGEAQQSSQPSKKEQ 104
           LA++EPADKH+PD  F+AEAK S+ + TSG    ++ P+ K+Q
Sbjct: 64  LALKEPADKHKPDASFVAEAKDSVKKLTSG--VTNTDPALKKQ 104