Miyakogusa Predicted Gene

Lj2g3v1014320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1014320.1 Non Chatacterized Hit- tr|D8UIB6|D8UIB6_VOLCA
Putative uncharacterized protein OS=Volvox carteri GN=,38.33,4e-18,no
description,NULL; seg,NULL; coiled-coil,NULL; Oxygen-evolving enhancer
protein 3,,PsbQ-like domai,CUFF.35902.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01480.2 | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:18...   241   3e-64
AT3G01480.1 | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:18...   241   3e-64

>AT3G01480.2 | Symbols: CYP38, ATCYP38 | cyclophilin 38 |
           chr3:188569-190252 FORWARD LENGTH=355
          Length = 355

 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 148/181 (81%), Gaps = 5/181 (2%)

Query: 84  RCSYQPPQHSQFQNKHEGRSFSLKHCAVSIALAVGLVTGVPTLGWPTDANA-ASPVLSDL 142
           RCS    +++    K  G   SLK CA+S+AL+VGL+  VP++  P +A+A A+PV+ D+
Sbjct: 36  RCSSGNTRYT----KQRGAFTSLKECAISLALSVGLMVSVPSIALPPNAHAVANPVIPDV 91

Query: 143 SVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDSVERNTRQAS 202
           SVLISGPPIKDP ALLRYALPIDNKA+REVQKPLEDITDSLKIAGVKALDSVERN RQAS
Sbjct: 92  SVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQAS 151

Query: 203 RALTQGKTLIISGLAESKKEHGVELLNKLEAGMDELELIIQDRNRDAVGPKQKELLQYVG 262
           R L QGK++I++G AESKK+HG E++ KLEAGM ++  I++DR RDAV PKQKE+L+YVG
Sbjct: 152 RTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVG 211

Query: 263 G 263
           G
Sbjct: 212 G 212


>AT3G01480.1 | Symbols: CYP38, ATCYP38 | cyclophilin 38 |
           chr3:188569-190674 FORWARD LENGTH=437
          Length = 437

 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/181 (66%), Positives = 148/181 (81%), Gaps = 5/181 (2%)

Query: 84  RCSYQPPQHSQFQNKHEGRSFSLKHCAVSIALAVGLVTGVPTLGWPTDANA-ASPVLSDL 142
           RCS    +++    K  G   SLK CA+S+AL+VGL+  VP++  P +A+A A+PV+ D+
Sbjct: 36  RCSSGNTRYT----KQRGAFTSLKECAISLALSVGLMVSVPSIALPPNAHAVANPVIPDV 91

Query: 143 SVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDSVERNTRQAS 202
           SVLISGPPIKDP ALLRYALPIDNKA+REVQKPLEDITDSLKIAGVKALDSVERN RQAS
Sbjct: 92  SVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQAS 151

Query: 203 RALTQGKTLIISGLAESKKEHGVELLNKLEAGMDELELIIQDRNRDAVGPKQKELLQYVG 262
           R L QGK++I++G AESKK+HG E++ KLEAGM ++  I++DR RDAV PKQKE+L+YVG
Sbjct: 152 RTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVG 211

Query: 263 G 263
           G
Sbjct: 212 G 212