Miyakogusa Predicted Gene

Lj2g3v1014200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1014200.1 Non Chatacterized Hit- tr|E1ZB57|E1ZB57_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,38.46,3e-16,seg,NULL,CUFF.35888.1
         (287 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55250.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   326   1e-89

>AT3G55250.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           chloroplast, nucleus; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to
           46 proteins in 17 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:20479302-20480324 FORWARD LENGTH=277
          Length = 277

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 153/234 (65%), Positives = 194/234 (82%), Gaps = 1/234 (0%)

Query: 52  FTIRAYMEKPNSFASFANKVIGALPVVGLLARIMADEGGVGDDLVDFAEFRRRVGKKCSI 111
            +IRAY+EKPNSF++FANKVIG+LPV+GLLARI++DEGGVG DLVDFAEFR+RVG KC+ 
Sbjct: 42  LSIRAYIEKPNSFSTFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTP 101

Query: 112 ADSKAFYQFQKRRGKEGEPLYVLLCCWLAAIGAGLLKTEEILEGAARLRVSDDIEFEEQT 171
            DS+AFY+FQ+RRGK GEPLYVLLCCW+AA+GAGLLK+EEILEG  R+ +S+D+EFEEQ 
Sbjct: 102 DDSRAFYEFQQRRGKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQN 161

Query: 172 FIALMNEARERRAKLKTAPPALPMEIRVQKALDAIYVCSFWKDPVEQEDELLLTTMLSTV 231
           FIALM EAR+RRAKL    P +PME+RV+KAL+ IY C F +  +E+EDE LL  ML  V
Sbjct: 162 FIALMTEARQRRAKLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAV 221

Query: 232 FPSVQGQEIERLVKEKAEKVAAGVIDYDVPDFKLPSKEAVELQMKDLQFLRQNS 285
           FPSV+  EIER++KEKA +V  G  + +V   +LP KEA+++QMKDL+FL+Q +
Sbjct: 222 FPSVEKSEIERIIKEKATRVEEGGEEENVMAKRLP-KEAIQMQMKDLEFLQQQN 274