Miyakogusa Predicted Gene

Lj2g3v0947360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0947360.1 Non Chatacterized Hit- tr|I1N5H9|I1N5H9_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,81.3,0,polynuc_phos:
polyribonucleotide nucleotidyltransf,Polyribonucleotide
nucleotidyltransferase; POLYRI,CUFF.35833.1
         (953 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14580.1 | Symbols:  | polyribonucleotide nucleotidyltransfer...  1135   0.0  
AT3G03710.1 | Symbols: RIF10, PNP | polyribonucleotide nucleotid...   289   7e-78
AT3G61620.2 | Symbols: RRP41 | 3'-5'-exoribonuclease family prot...    68   4e-11
AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family prot...    68   4e-11
AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr...    64   5e-10
AT4G27490.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...    55   2e-07
AT4G29060.1 | Symbols: emb2726 | elongation factor Ts family pro...    55   2e-07
AT4G29060.2 | Symbols: emb2726 | elongation factor Ts family pro...    55   2e-07

>AT5G14580.1 | Symbols:  | polyribonucleotide
           nucleotidyltransferase, putative | chr5:4697612-4703013
           REVERSE LENGTH=991
          Length = 991

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/988 (59%), Positives = 719/988 (72%), Gaps = 66/988 (6%)

Query: 7   SWRSHRVRAICSG-------------SSGTKVLENFTEEFEIGSRIITLENGKIARFANG 53
           +WR+   R ICSG             S+GTK+LE+F EEFE+GSR+++ E GKIARFANG
Sbjct: 18  AWRALGFRTICSGRLGFAPSVPDSPVSAGTKILESFKEEFEVGSRVVSFETGKIARFANG 77

Query: 54  AVVLSMEDTKVLATVTSAKTDGSRDFLPLTVDYQEKQFAQGMIPSTYTRREGAPKERELL 113
           +VVL M++TKVL+TVT AKTD  RDFLPLTVDYQEKQ+AQG+IP+TY RREGAPKERELL
Sbjct: 78  SVVLGMDETKVLSTVTCAKTDSPRDFLPLTVDYQEKQYAQGLIPNTYMRREGAPKERELL 137

Query: 114 VGRIIDRPIRPLFPPGFYHEVQVMASVLSSDGKQDPDVLAANATSAALMLSDXXXXXXXX 173
            GR+IDRPIRPLFP GFYHEVQ+MASVLSSDGKQDPD+LAANA+SAALMLSD        
Sbjct: 138 CGRLIDRPIRPLFPTGFYHEVQIMASVLSSDGKQDPDILAANASSAALMLSDVPWGGPIG 197

Query: 174 XXXXXXXXXQFVVNPTMDELKLSDLNLVYACTKDKTLMIDVQARDISDKDLEAGLRLAHP 233
                    QFVVNPTMDEL  SDLNL+YACT+DKT+MIDVQ+R+IS+KDL A LRLAHP
Sbjct: 198 VIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTMMIDVQSREISEKDLAAALRLAHP 257

Query: 234 EAVKYIEPQIRLAAKAGKSKKEYKLSMLSESTMEKVTSMAEAPIKAVFTDPSYGKFERGE 293
           EAVKY++PQIRLA KAGK KKEYKLSMLS+ T+EKV  +A   I++VFTDPSYGKFERGE
Sbjct: 258 EAVKYLDPQIRLAEKAGKQKKEYKLSMLSDKTLEKVADLAATRIESVFTDPSYGKFERGE 317

Query: 294 ALDNITQDVKRVLEEEGDEESLNFLPXXXXXXXXXXXXXXIIAEGSRVDGRQLDEVRPLY 353
           ALDNI +DV++V EEEGD+ESL+ LP              +I++G RVDGR +DEVRP+Y
Sbjct: 318 ALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKKVVRSRMISDGFRVDGRHVDEVRPIY 377

Query: 354 CEAGYISNLHGSAVFSRGETQVLCTVTLGAPTDAQRLDSLVGPPTKRFMLHYSFPPFCIN 413
           CE+ Y+  LHGSA+FSRG+TQVLCTVTLGAP +AQ LDSLVGPP KRFMLHYSFPP+C N
Sbjct: 378 CESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPKKRFMLHYSFPPYCTN 437

Query: 414 EVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYTFRVNSEVMASDGSTSMATVCGGSI 473
           EVGKRGGLNRREVGHGTLAEKALLAVLPPE+ FPYT R+NSEVM+SDGSTSMA+VCGGS+
Sbjct: 438 EVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINSEVMSSDGSTSMASVCGGSM 497

Query: 474 ALMDAGIPIREHVAGVSVGLVTELDPCTGEITDYRILTDILGLEDHLGDIDFKIAGTRKG 533
           ALMDAGIP+R HVAGVSVGL+T++DP +GEI DYRI+TDILGLEDHLGD+DFKIAGTR G
Sbjct: 498 ALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILGLEDHLGDMDFKIAGTRDG 557

Query: 534 VTAIQLDMKPAGIPLDIICECLEPAHKARLQILDLMEQAINAPRNKDN--SLRLVTLKYP 591
           VTAIQLD+KPAGIPLDI+CE LE A +ARLQILD ME+ IN+PR +D   S RL TLKY 
Sbjct: 558 VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMERNINSPRGQDGAYSPRLATLKYS 617

Query: 592 NDSIRRLIGPMGALKKKMEDETGARISVGDGTLTIVAKNQSVMDKILEKIDFIVGRQIEV 651
           NDS+R LIGPMG LK+K+E ETGAR+S+ +GTLTIVAKNQ VM+K  E++DFI+GR++ V
Sbjct: 618 NDSLRTLIGPMGVLKRKIEVETGARLSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVV 677

Query: 652 GGIYKGNVTSIKEYGAFIEFNGGQQGLLHISELSHEPVSRVSDVVSIGQQLSLMCIGQDV 711
           GG+YKG V+SIKEYGAF+EF GGQQGLLH+SELSHEPVS+VSDV+ IGQ ++ MCI  DV
Sbjct: 678 GGVYKGTVSSIKEYGAFVEFPGGQQGLLHMSELSHEPVSKVSDVLDIGQCITTMCIETDV 737

Query: 712 HGNIKLSLKASLPRPGGLQTNDVVEGSATSAKETANIWAPVWDASSTQEQQNSASQFPIG 771
            GNIKLS KA LP+P     +D   G     KE++ ++           + +S  +    
Sbjct: 738 RGNIKLSRKALLPKPKRKPASDA--GKDPVMKESSTVYI----------ENSSVGEIVAS 785

Query: 772 INEEVEEAKPPTSQTPVILIRSAEECDEEEKSTNLNLSSKG------------------- 812
           +   V   +      P ++IR+A EC+E EKS+ +N + K                    
Sbjct: 786 MPSIVTPLQKSRLSVPAVVIRTAVECNEAEKSSPVNDNDKPRRAATSKPDRKPKSTASKL 845

Query: 813 -------------PPIENGVQLGXXXXXXXXXXXXXXHTNDSPSHSGPLPYTNAKKPEFA 859
                         P E   + G                N + S+   + ++ AKK   +
Sbjct: 846 IATQKEEEALESIAPEETSAECGEILKQDGKLKSVSPKNNSTASNL--VSFSKAKK---S 900

Query: 860 TKKESKSDIQRPEREESGAEKDLKVGTEVTAKVHQIRAHXXXXXXXXXXXXMYRFEEDAK 919
           T KE+ S+  + E   S + + LK+GTE+TA V  +RA             MY F+ D  
Sbjct: 901 TMKENLSE-NKAEESASVSTRKLKIGTEMTATVDHVRALGLVLDLGGEIRGMYIFQGDKD 959

Query: 920 KDFKIGEEMQVVCSSFSSKGIPVLSALD 947
           K FK G+ ++V C+SF++KG+PV++ +D
Sbjct: 960 K-FKKGDTLRVKCTSFNTKGVPVMALVD 986


>AT3G03710.1 | Symbols: RIF10, PNP | polyribonucleotide
           nucleotidyltransferase, putative | chr3:919542-924906
           FORWARD LENGTH=922
          Length = 922

 Score =  289 bits (739), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 168/401 (41%), Positives = 245/401 (61%), Gaps = 16/401 (3%)

Query: 334 IIAEGSRVDGRQLDEVRPLYCEAGYISNLHGSAVFSRGETQVLCTVTLGAPTDAQRLDSL 393
           I+  G R DGR LDE+RP+    G +   HGS +F+RGETQ L  VTLG    AQR+D+L
Sbjct: 441 IVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNL 500

Query: 394 VGP-PTKRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYTFRV 452
            G    KRF L Y+FPP  + EVG+ G  +RRE+GHGTLAE+AL  +LP +DDFPYT RV
Sbjct: 501 EGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRV 560

Query: 453 NSEVMASDGSTSMATVCGGSIALMDAGIPIREHVAGVSVGLVTELDPCTGEITDYRILTD 512
            S V+ S+GS+SMA+VCGG +AL DAG+P++  VAG+++G+V + +   G+ +   IL+D
Sbjct: 561 ESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPL-ILSD 619

Query: 513 ILGLEDHLGDIDFKIAGTRKGVTAIQLDMKPAGIPLDIICECLEPAHKARLQILDLMEQA 572
           I G ED  GD+DFK+AG   GVTA Q+D+K  GI L+I+ + L  A   R  IL  M + 
Sbjct: 620 ITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKC 679

Query: 573 INAPR---NKDNSLRLVTLKYPNDSIRRLIGPMGALKKKMEDETGARI--SVGDGTLTIV 627
              P    +K   L L+   +P+  +  LIG  G   K + +E+G        DGT+ I+
Sbjct: 680 SPPPTLSLSKYAPLILIMKVHPS-KVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIM 738

Query: 628 AKNQSVMDK---ILEKIDFIVGRQIEVGGIYKG-NVTSIKEYGAFIEFNGGQQGLLHISE 683
           A + + +++   I+  +  +      VG IY+   + S+  YGAF+E   G++GL HISE
Sbjct: 739 AIDVASLERAKAIISGLTMVP----SVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISE 794

Query: 684 LSHEPVSRVSDVVSIGQQLSLMCIGQDVHGNIKLSLKASLP 724
           LS E +++  D   +G ++ +  I  +  G ++LS++A LP
Sbjct: 795 LSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLP 835



 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 5/278 (1%)

Query: 35  IGSRIITLENGKIARFANGAVVLSMEDTKVLATVTSAKTDGS-RDFLPLTVDYQEKQFAQ 93
            G+R I +E G + R A+ AV ++  +T V  +V  A       DFLPL V YQE+  A 
Sbjct: 94  FGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAV 153

Query: 94  GMIPSTYTRREGAPKERELLVGRIIDRPIRPLFPPGFYHEVQVMASVLSSDGKQDPDVLA 153
           G     + +REG  K+ E+L+ R+IDRP+RP  P GFY+E Q+++ VLS DG   PD LA
Sbjct: 154 GRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALA 213

Query: 154 ANATSAALMLSDXXXXXXXXXXXXXXXXXQFVVNPTMDELKLSDLNLVYACTKDKTLMID 213
             +   A+ LS+                 +F+VNPT+ E++ S L+L  A T    L I+
Sbjct: 214 VTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGTDTAILTIE 273

Query: 214 VQARDISDKDLEAGLRLAHPEAVKYIEPQIR-LAAKAGKSKKEYKLSMLSESTMEKVTSM 272
             +  + ++ L   +++   +AV+     I  LA K GK K    + +      + V  +
Sbjct: 274 GYSNFLPEEMLLQAVKVGQ-DAVQATCIAIEVLAKKYGKPKMLDAIRLPPPELYKHVKEL 332

Query: 273 AEAPIKAVFTDPSYGKFERGEALDNITQDVKRVLEEEG 310
           A   +       S  K  R +A+ ++ + V  +L E+G
Sbjct: 333 AGEELTKALQIKS--KISRRKAISSLEEKVLTILTEKG 368


>AT3G61620.2 | Symbols: RRP41 | 3'-5'-exoribonuclease family protein
           | chr3:22801382-22802910 REVERSE LENGTH=241
          Length = 241

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 18/209 (8%)

Query: 337 EGSRVDGRQLDEVRPLYCEAGYISNLHGSAVFSRGETQVLCTVTLGAPTDAQRLDSLVGP 396
           EG R+DGR+ +E+R +  E G +S   GSAVF  G T+V+  V    P + Q        
Sbjct: 7   EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVY--GPREIQNKSQQKKN 64

Query: 397 PTKRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYT-FRVNSE 455
                +  YS   F   +  +R   +RR      +  + + A +  E   P++   +  +
Sbjct: 65  DHAVVLCEYSMAQFSTGD-RRRQKFDRRSTELSLVIRQTMEACILTE-LMPHSQIDIFLQ 122

Query: 456 VMASDGSTSMATVCGGSIALMDAGIPIREHVAGVSVGLVTELDPCTGEITDYRILTDILG 515
           V+ +DG T  A +   ++AL DAGIP+R+     S G +               L D+  
Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP-----------LLDLNY 171

Query: 516 LEDHLG--DIDFKIAGTRKGVTAIQLDMK 542
           +ED  G  D+   I      V+ +Q+D K
Sbjct: 172 VEDSAGGADVTVGILPKLDKVSLLQMDAK 200


>AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family protein
           | chr3:22801382-22802910 REVERSE LENGTH=241
          Length = 241

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 18/209 (8%)

Query: 337 EGSRVDGRQLDEVRPLYCEAGYISNLHGSAVFSRGETQVLCTVTLGAPTDAQRLDSLVGP 396
           EG R+DGR+ +E+R +  E G +S   GSAVF  G T+V+  V    P + Q        
Sbjct: 7   EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVY--GPREIQNKSQQKKN 64

Query: 397 PTKRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYT-FRVNSE 455
                +  YS   F   +  +R   +RR      +  + + A +  E   P++   +  +
Sbjct: 65  DHAVVLCEYSMAQFSTGD-RRRQKFDRRSTELSLVIRQTMEACILTE-LMPHSQIDIFLQ 122

Query: 456 VMASDGSTSMATVCGGSIALMDAGIPIREHVAGVSVGLVTELDPCTGEITDYRILTDILG 515
           V+ +DG T  A +   ++AL DAGIP+R+     S G +               L D+  
Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP-----------LLDLNY 171

Query: 516 LEDHLG--DIDFKIAGTRKGVTAIQLDMK 542
           +ED  G  D+   I      V+ +Q+D K
Sbjct: 172 VEDSAGGADVTVGILPKLDKVSLLQMDAK 200


>AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 |
           chr5:11619262-11621223 REVERSE LENGTH=416
          Length = 416

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 648 QIEVGGIYKGNVTSIKEYGAFIEFNGGQQGLLHISELSHEPVSRVSDVVSIGQQLSLMCI 707
           Q+ +G +  G V S+K YGAFI+  GG  GLLH+S++SH+ VS ++ V+  G  L +M +
Sbjct: 260 QLGIGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMIL 318

Query: 708 GQDV-HGNIKLSLKASLPRPGGLQTN 732
             D   G + LS K   P PG +  N
Sbjct: 319 SHDRDRGRVSLSTKKLEPTPGDMIRN 344


>AT4G27490.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr4:13739961-13741647 FORWARD LENGTH=256
          Length = 256

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 339 SRVDGRQLDEVRPLYCEAGYISNLHGSAVFSRGETQVLCTVTLGAPTDAQRLDSLVGPPT 398
           SR DGR   + RP   + G +S+  GSA    G T+V+  V++  P ++++  ++V    
Sbjct: 33  SRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVI--VSVFGPRESKK--AMVYSDV 88

Query: 399 KRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYTFRVNSEVMA 458
            R   + S+  F    +G+  G + +E  + ++  KAL  V+  E     T  V + V+ 
Sbjct: 89  GRLNCNVSYTNFASPTLGQ--GTDHKE--YSSMLHKALEGVIMMETFPKTTVDVFALVLE 144

Query: 459 SDGSTSMATVCGGSIALMDAGIPIREHVAGVSVGLVTE---LDPCTGE 503
           S GS     +   S+AL DAGI + + +  VSV  + +   +DP T E
Sbjct: 145 SGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEE 192


>AT4G29060.1 | Symbols: emb2726 | elongation factor Ts family
           protein | chr4:14317744-14321315 FORWARD LENGTH=953
          Length = 953

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 652 GGIYKGNVTSIKEYGAFIEFNGGQQGLLHISELSHEPVSRVSDVVSIGQQLSLMCIGQDV 711
           G  + G V +I+ +GAF++F     GL+H+S+LS   V  VS VV+IGQ++ +  +  D+
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 712 HGN-IKLSLK 720
               I L+++
Sbjct: 196 ESKRISLTMR 205


>AT4G29060.2 | Symbols: emb2726 | elongation factor Ts family
           protein | chr4:14317744-14321315 FORWARD LENGTH=709
          Length = 709

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 652 GGIYKGNVTSIKEYGAFIEFNGGQQGLLHISELSHEPVSRVSDVVSIGQQLSLMCIGQDV 711
           G  + G V +I+ +GAF++F     GL+H+S+LS   V  VS VV+IGQ++ +  +  D+
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195

Query: 712 HGN-IKLSLK 720
               I L+++
Sbjct: 196 ESKRISLTMR 205