Miyakogusa Predicted Gene

Lj2g3v0945240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0945240.1 Non Chatacterized Hit- tr|I3SKX4|I3SKX4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,52.88,2e-18,seg,NULL,CUFF.35821.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40460.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   108   6e-25
AT1G10690.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    72   1e-13
AT1G60783.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    68   2e-12
AT3G27630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    64   3e-11

>AT5G40460.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:16202465-16202803 FORWARD
           LENGTH=112
          Length = 112

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 72/108 (66%), Gaps = 6/108 (5%)

Query: 1   MGFSKKAQAETGLESEAKKWVIAGISVR-SLKPINTKQRGKENDCVXXXXXXAGR----S 55
           MGFSKK+Q E GLES+ KKWVIAGIS+R SLKP+ TK R                    S
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 56  TTPTAKEARIPEKLRCPPAPRKRRPSRCNNFSGVREFFTPP-DLETVF 102
           TTPTAKE +IPE L CPPAPRKRRP+     + VREFFTPP DLETVF
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETVF 108


>AT1G10690.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in
           9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:3550236-3550568 REVERSE
           LENGTH=110
          Length = 110

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 22/114 (19%)

Query: 1   MGFSKKAQAETGLE----SEAKKWVIAGISVRS-LKPIN------TKQRGKENDCVXXXX 49
           MG+S K   +   E    ++ KKWVIAGI  RS LK IN        +  +++ C     
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQC----- 55

Query: 50  XXAGRSTTPTAKEARIPEKLRCPPAPRKRRPS-RCNNFSGVREFFTPPDLETVF 102
                 TTPTA   RIP    CP AP+KR+PS +C+  +  R++F+PPDLETVF
Sbjct: 56  -----PTTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104


>AT1G60783.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G10690.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr1:22375173-22375493
           FORWARD LENGTH=106
          Length = 106

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 11/107 (10%)

Query: 1   MGFSKKAQAETGLE----SEAKKWVIAGISVRS-LKPINTKQRGKENDCVXXXXXXAGRS 55
           MGFS K   +   +    +E KK VI GIS+ S +KPI+       N             
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSN-----TEDEDLCP 55

Query: 56  TTPTAKEARIPEKLRCPPAPRKRRPSRCNNFSGVREFFTPPDLETVF 102
           TTPTA   RIP  + CPPAP+KR+ +   ++ G REFF+PPDLETVF
Sbjct: 56  TTPTADSVRIPTVIPCPPAPKKRKLTLKVSY-GPREFFSPPDLETVF 101


>AT3G27630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in
           6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:10231119-10231418 REVERSE
           LENGTH=99
          Length = 99

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 1   MGFSKKAQAETGLESEAKKWVIAGISVR-SLKPINTKQRGKENDCVXXXXXXAGRSTTPT 59
           MG SKK+Q    L+++ KK++ A  S+R SLKP+ TK    E +         G   TPT
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERE------SEDGICITPT 54

Query: 60  AKEARIPEKLRCPPAPRKRRPS-RCNNFSGVREFFTPPDLETVF 102
           A+ A+ PE   CP APRKR P  +C N   +  F  P D E VF
Sbjct: 55  ARGAKTPE---CPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95