Miyakogusa Predicted Gene

Lj2g3v0934150.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0934150.2 tr|K1R1U0|K1R1U0_CRAGI Denticleless-like protein
(Fragment) OS=Crassostrea gigas PE=4 SV=1,31.43,2e-18,WD40,WD40
repeat; no description,WD40/YVTN repeat-like-containing domain;
LETHAL(2)DENTICLELESS PROT,CUFF.35817.2
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27640.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   207   6e-54
AT5G50230.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    52   2e-07
AT1G10580.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    52   5e-07
AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repe...    49   3e-06

>AT3G27640.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:10232307-10235467 FORWARD LENGTH=535
          Length = 535

 Score =  207 bits (526), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 130/176 (73%), Gaps = 4/176 (2%)

Query: 2   SITSVLYLKDQVSIATAGAVESVLKFWDTRNLKSIVTQTCPHPQST---EKQVHGITSLS 58
           SITSVLY+KD+++IATAGA +S LKFWD R LK+   Q  P    T   EK+ HGI SLS
Sbjct: 240 SITSVLYVKDEITIATAGAPDSALKFWDIRKLKAPFAQASPQSDPTNTKEKRSHGIVSLS 299

Query: 59  QDDSGLFLTASCMDNRVYLYNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTN 118
           QD SG +LTASC DNR+YLYNTL+L+KG  +SFSGC+I+SFFV+  ISPD  +++ GS++
Sbjct: 300 QDSSGTYLTASCKDNRIYLYNTLRLDKGPVQSFSGCRIDSFFVRTMISPDGEYVLSGSSD 359

Query: 119 GRPCVWRVNKPQ-DYSILKSHYEEVTAVDWCSSDINKFATASDDPSVHVWRQSSSI 173
           G   +W+VNKPQ D  ILK H  EVTAVDW  S+I K ATASDD +V +W   ++I
Sbjct: 360 GNAYIWQVNKPQVDPIILKGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNI 415


>AT5G50230.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:20448632-20450855 REVERSE LENGTH=509
          Length = 509

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 18  AGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDDSGLFLTASCMDNRVYL 77
           +G ++  L+ WD +  K ++++   H  +       +TS+S   +G  +  S  DN   +
Sbjct: 368 SGHMDGNLRLWDIQTGK-LLSEVAGHSSA-------VTSVSLSRNGNRILTSGRDNVHNV 419

Query: 78  YNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTNGRPCVWRVNKPQDYSILKS 137
           ++T  LE       SG ++ S + ++ ISPD  ++  GS +G   VW ++K    SILK 
Sbjct: 420 FDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKE 479

Query: 138 HYEEVTAVDWCSSDINK-FATASDDPSVHVW 167
               +    W  S I K  A+A  +  V  W
Sbjct: 480 QTSPILCCSW--SGIGKPLASADKNGYVCTW 508


>AT1G10580.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:3491560-3493665 REVERSE LENGTH=573
          Length = 573

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 47  TEKQVHGITSLSQDDSGLFLTASCMDNRVYLYNT---LQLEKGHFKSFSGCQIESFFVKA 103
           +E  +H + S+S   +G +L A  +DN++ +Y+T    QL K   K F+G  +  +  + 
Sbjct: 451 SEPHMHSMPSISVHPNGNWLAAQSLDNQILIYSTRERFQLNKK--KRFAGHIVAGYACQV 508

Query: 104 AISPDASHIVCGSTNGRPCVWRVNKPQDYSILKSHYEEVTAVDWCSSDINKFATASDDPS 163
             SPD   ++ G   G+   W     + +  LK H       +W   + +K AT   D  
Sbjct: 509 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKVATCGWDGL 568

Query: 164 VHVW 167
           +  W
Sbjct: 569 IKYW 572


>AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:17673397-17675630 FORWARD
           LENGTH=523
          Length = 523

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 13  VSIATAGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDDSGLFLTASCMD 72
           V +A     ES++  +  + ++ +  +T      +E+Q   ITSLS    G F   +   
Sbjct: 361 VDLAVTPDGESMITVFSDKEIRILNLETKVERVISEEQ--PITSLSISGDGKFFIVNLSC 418

Query: 73  NRVYLYNTLQLEKGHFKSFSGCQIESFFVKAAISP-DASHIVCGSTNGRPCVWRVNKPQD 131
             ++L++     K   K FSG +   + +++     D+S I  GS + +  +W +   + 
Sbjct: 419 QEIHLWDLAGEWKQPLK-FSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKP 477

Query: 132 YSILKSHYEEVTAVDWCSSDINKFATASDDPSVHVW 167
             +L  H   V  V W   +    A+ASDD ++ +W
Sbjct: 478 LEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513